miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 135060 0.7 0.189621
Target:  5'- ---gGGGCGGagCCCagagcgGGCCcgGGCCCGCCg -3'
miRNA:   3'- cagaCCCGCCg-GGG------CCGG--CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 134912 0.73 0.117811
Target:  5'- cGUCgGGGCgcgaGGCCCgGGCUcgGGCCC-CCg -3'
miRNA:   3'- -CAGaCCCG----CCGGGgCCGG--CCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 134874 0.69 0.217721
Target:  5'- -gCUcGGCGGCCCCcgGGCUcgGGCCCcugggcGCCg -3'
miRNA:   3'- caGAcCCGCCGGGG--CCGG--CCGGG------UGG- -5'
6485 5' -68.2 NC_001847.1 + 134649 0.67 0.323689
Target:  5'- ---gGGGuUGGCgCgCGGCCGcCCCGCCg -3'
miRNA:   3'- cagaCCC-GCCGgG-GCCGGCcGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 134260 0.81 0.032139
Target:  5'- ---cGcGGCGGCCCCGGCgCGGgCCGCCg -3'
miRNA:   3'- cagaC-CCGCCGGGGCCG-GCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 134223 0.66 0.337585
Target:  5'- ---aGGGCGGCggugggaaGGCCgGGUCCGCCu -3'
miRNA:   3'- cagaCCCGCCGggg-----CCGG-CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 134168 0.66 0.359232
Target:  5'- ---gGcGGCGgaaGCCCC-GCCGGCCCggguGCCg -3'
miRNA:   3'- cagaC-CCGC---CGGGGcCGGCCGGG----UGG- -5'
6485 5' -68.2 NC_001847.1 + 133885 0.66 0.344694
Target:  5'- -gCUGGG-GGCUCggcgcgccgcugCGGCCGGUgUACCu -3'
miRNA:   3'- caGACCCgCCGGG------------GCCGGCCGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 133709 0.67 0.316902
Target:  5'- ----cGGUGGCCaCGcGCCugGGCCCGCCa -3'
miRNA:   3'- cagacCCGCCGGgGC-CGG--CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 133304 0.67 0.310224
Target:  5'- -cCUGGGCcgGGCgCUGGaCgGGCgCGCCg -3'
miRNA:   3'- caGACCCG--CCGgGGCC-GgCCGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 133213 0.66 0.35191
Target:  5'- ----cGGCGGCCCgagUGGCCG-CCgCGCCg -3'
miRNA:   3'- cagacCCGCCGGG---GCCGGCcGG-GUGG- -5'
6485 5' -68.2 NC_001847.1 + 132709 0.69 0.222737
Target:  5'- ---gGcGGCGGCCCU-GCCGG-CCGCCg -3'
miRNA:   3'- cagaC-CCGCCGGGGcCGGCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 132594 0.72 0.132944
Target:  5'- ---aGGGCcGCCCCGGcCCGGCggcgggagcgCCGCCg -3'
miRNA:   3'- cagaCCCGcCGGGGCC-GGCCG----------GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 132382 0.68 0.272405
Target:  5'- ---cGGG-GGCgCCGgcGCCGGCgCCGCCg -3'
miRNA:   3'- cagaCCCgCCGgGGC--CGGCCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 132274 0.66 0.344694
Target:  5'- ---cGcGGCGGCCCgCGcGUCGGCCUgggcGCUg -3'
miRNA:   3'- cagaC-CCGCCGGG-GC-CGGCCGGG----UGG- -5'
6485 5' -68.2 NC_001847.1 + 132170 0.67 0.330583
Target:  5'- ---cGcGCGGCCCCGGC-GGCgCugCg -3'
miRNA:   3'- cagaCcCGCCGGGGCCGgCCGgGugG- -5'
6485 5' -68.2 NC_001847.1 + 132110 0.67 0.329888
Target:  5'- cUCcGGGCcGCCgagcugcUCGGCgCGGCCCGCg -3'
miRNA:   3'- cAGaCCCGcCGG-------GGCCG-GCCGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 132040 0.67 0.310224
Target:  5'- ---cGcGGCGGgCCgCGGCCuGCCgGCCg -3'
miRNA:   3'- cagaC-CCGCCgGG-GCCGGcCGGgUGG- -5'
6485 5' -68.2 NC_001847.1 + 131986 0.71 0.172703
Target:  5'- -gCUGgaGGCGGCCcgCCGcgccGCCGGCgCCGCCg -3'
miRNA:   3'- caGAC--CCGCCGG--GGC----CGGCCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 131833 0.69 0.222737
Target:  5'- ---cGGcaGCGGCgCCCGcGCCGcGCUCGCCg -3'
miRNA:   3'- cagaCC--CGCCG-GGGC-CGGC-CGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.