miRNA display CGI


Results 41 - 60 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 134200 0.73 0.562651
Target:  5'- cGUGgAGcGGCGCGc-GCGGGCCGAGGg -3'
miRNA:   3'- -UACgUUuUCGCGUucCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 70236 0.73 0.573263
Target:  5'- gGUGUGAc-GCGCGGGGCGGGCgGcGGg -3'
miRNA:   3'- -UACGUUuuCGCGUUCCGCCCGgUuUC- -5'
6486 3' -53.4 NC_001847.1 + 52568 0.73 0.605344
Target:  5'- cUGCGAGAGCuggagcuCGAGGCGGcgGCCGAGGc -3'
miRNA:   3'- uACGUUUUCGc------GUUCCGCC--CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 68598 0.73 0.583921
Target:  5'- -cGCAGuAGGCGCAcgcguccaGCGGGCCGGGGa -3'
miRNA:   3'- uaCGUU-UUCGCGUuc------CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 2093 0.73 0.616092
Target:  5'- -cGCGGGGcccGCGCGGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUUU---CGCGUU-CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 75358 0.73 0.573263
Target:  5'- -gGUAAAAGCGCGucucGGCGGGCau-GGg -3'
miRNA:   3'- uaCGUUUUCGCGUu---CCGCCCGguuUC- -5'
6486 3' -53.4 NC_001847.1 + 104906 0.73 0.616092
Target:  5'- -cGCGGGGcccGCGCGGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUUU---CGCGUU-CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 8111 0.73 0.616092
Target:  5'- -gGCGccAGCGCAGGcGCGGGgccCCAGGGg -3'
miRNA:   3'- uaCGUuuUCGCGUUC-CGCCC---GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 68796 0.73 0.605344
Target:  5'- -gGCGGccGCGCGA-GCGGGCCGAc- -3'
miRNA:   3'- uaCGUUuuCGCGUUcCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 125711 0.73 0.605344
Target:  5'- cUGCAAGAGCaugGCuGGGCuGGGCUggGGu -3'
miRNA:   3'- uACGUUUUCG---CGuUCCG-CCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 102069 0.73 0.583921
Target:  5'- -gGCAGcAAGgGCAGGcGCGGGCCGc-- -3'
miRNA:   3'- uaCGUU-UUCgCGUUC-CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 71072 0.73 0.583921
Target:  5'- gGUGCuggcGGCGCucggccGGCGcGGCCAGAGg -3'
miRNA:   3'- -UACGuuu-UCGCGuu----CCGC-CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 63414 0.73 0.583921
Target:  5'- -cGCAcgGGAGCGCAcgcggcgccGGCGGGCCGGc- -3'
miRNA:   3'- uaCGU--UUUCGCGUu--------CCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 44292 0.73 0.605344
Target:  5'- -gGCGGcgcGGCGCGGcgcGGCGGGCCAGc- -3'
miRNA:   3'- uaCGUUu--UCGCGUU---CCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 95296 0.72 0.645156
Target:  5'- uUGCGGccgcuggcgccuccAGGCGCGGcgccGGCaGGGCCGAAGg -3'
miRNA:   3'- uACGUU--------------UUCGCGUU----CCG-CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 115281 0.72 0.636545
Target:  5'- -gGCGGGcuaagccGGCGCccccGGGcGCGGGCCAAGGg -3'
miRNA:   3'- uaCGUUU-------UCGCG----UUC-CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 19427 0.72 0.663424
Target:  5'- -aGCGGGAGCGCcaAAGGCcgcgcgcccgcugccGGGCCAGc- -3'
miRNA:   3'- uaCGUUUUCGCG--UUCCG---------------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 122816 0.72 0.659131
Target:  5'- -gGCAGGaccucgauGGCGCGcAGGUGGGCCGucAAGu -3'
miRNA:   3'- uaCGUUU--------UCGCGU-UCCGCCCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 132633 0.72 0.648384
Target:  5'- -gGCAgcAAAGCGCGAGGCGGcCCu--- -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCGCCcGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 25402 0.72 0.648384
Target:  5'- -cGCGGAAGCaCu--GCGGGCCAGGGg -3'
miRNA:   3'- uaCGUUUUCGcGuucCGCCCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.