miRNA display CGI


Results 61 - 80 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 95641 0.72 0.963566
Target:  5'- -gCCGCucUGGCGCGGGGGgcgGCGcgGGCc -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 10621 0.72 0.967037
Target:  5'- gCCCUGCUGGCGCu--GGUcCuccGGCu -3'
miRNA:   3'- -GGGGCGACCGCGuuuUUAuGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 45587 0.72 0.967037
Target:  5'- cCCUCGCcgGGCGCGAcgaucacguaggGGAUGCGGUccuugacguuggGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGUU------------UUUAUGUUA------------UCG- -5'
6487 3' -47.4 NC_001847.1 + 36686 0.72 0.967037
Target:  5'- cCCCCGCUGGaCG-AGAGcgGC-GUGGUg -3'
miRNA:   3'- -GGGGCGACC-GCgUUUUuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 113434 0.72 0.967037
Target:  5'- gCCCUGCUGGCGCu--GGUcCuccGGCu -3'
miRNA:   3'- -GGGGCGACCGCGuuuUUAuGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 85855 0.72 0.967037
Target:  5'- gCgUCGCUGGCGCGGAuguuAUACGGc-GCg -3'
miRNA:   3'- -GgGGCGACCGCGUUUu---UAUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 70718 0.72 0.969954
Target:  5'- gCCCGCggcGaGCGCGAGGAcagccgcUGcCAAUAGCg -3'
miRNA:   3'- gGGGCGa--C-CGCGUUUUU-------AU-GUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 60512 0.72 0.970267
Target:  5'- gCCCCGCcucGCGCGAGGcgcugcccagcuGcACGAUGGCg -3'
miRNA:   3'- -GGGGCGac-CGCGUUUU------------UaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 95722 0.72 0.970267
Target:  5'- -nCCGCucUGGCGCGGGGGgcgGCGcgGGCc -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 117369 0.72 0.970267
Target:  5'- gCCCCGCcgaagGaGCGCAAGugGAUGCucugcgAGCg -3'
miRNA:   3'- -GGGGCGa----C-CGCGUUU--UUAUGuua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 43230 0.72 0.970267
Target:  5'- gCCCGgUGGCGguGGGGgcGCGcgGGCg -3'
miRNA:   3'- gGGGCgACCGCguUUUUa-UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 34468 0.72 0.970267
Target:  5'- -gCCGCcGGCgGCGAGGAUGCGGacGGCg -3'
miRNA:   3'- ggGGCGaCCG-CGUUUUUAUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 37409 0.72 0.970267
Target:  5'- gCgUGCUGGCGCGcauGUGCAuuccgGGCg -3'
miRNA:   3'- gGgGCGACCGCGUuuuUAUGUua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 35986 0.72 0.970267
Target:  5'- gCCgGCUGGCGCcacAAGGcGCGcggAUAGCg -3'
miRNA:   3'- gGGgCGACCGCGu--UUUUaUGU---UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 66544 0.71 0.972683
Target:  5'- gCCCGCUGGaCGCGugcgccuacUGCGGcAGCg -3'
miRNA:   3'- gGGGCGACC-GCGUuuuu-----AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 105895 0.71 0.973264
Target:  5'- gUCCGUgcgcGGcCGCGGGGccAUGCAGUGGCg -3'
miRNA:   3'- gGGGCGa---CC-GCGUUUU--UAUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 132714 0.71 0.973264
Target:  5'- -gCgGCUGGCGCGAAGcuugGCGA-AGCg -3'
miRNA:   3'- ggGgCGACCGCGUUUUua--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 76595 0.71 0.973264
Target:  5'- gCCgCCGCUGGCggcgGCGAAGAccGCGGcGGCc -3'
miRNA:   3'- -GG-GGCGACCG----CGUUUUUa-UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 111090 0.71 0.973264
Target:  5'- gCCCgGCU-GCGCGAGAAggucgcgcgGCAcgGGCu -3'
miRNA:   3'- -GGGgCGAcCGCGUUUUUa--------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 134606 0.71 0.976036
Target:  5'- cCCCCGgaGaGCGCAucuAGUAgAAcAGCg -3'
miRNA:   3'- -GGGGCgaC-CGCGUuu-UUAUgUUaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.