Results 21 - 40 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6487 | 5' | -50.9 | NC_001847.1 | + | 91610 | 0.71 | 0.889916 |
Target: 5'- gCGCCGUguUGGccgcgaggaaGCCCGCGCGc -3' miRNA: 3'- gGCGGUA--ACCuaaaaaa---CGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 11979 | 0.71 | 0.87763 |
Target: 5'- gUGCCGUUGGcgggg--GCUCGCGCa -3' miRNA: 3'- gGCGGUAACCuaaaaaaCGGGCGCGc -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 7962 | 0.71 | 0.905408 |
Target: 5'- gCGCCAUgcGGGUUUUUaggGCCUGCuCGg -3' miRNA: 3'- gGCGGUAa-CCUAAAAAa--CGGGCGcGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 122914 | 0.71 | 0.87763 |
Target: 5'- cUCGCCGUUcGGGUg---UGCgCGCGCc -3' miRNA: 3'- -GGCGGUAA-CCUAaaaaACGgGCGCGc -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 62411 | 0.71 | 0.880584 |
Target: 5'- cCCGCCGgcgcug---UUGCCCGCGUGc -3' miRNA: 3'- -GGCGGUaaccuaaaaAACGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 63192 | 0.71 | 0.898835 |
Target: 5'- gCGCCA-UGGccga---GCCCGCGCGc -3' miRNA: 3'- gGCGGUaACCuaaaaaaCGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 24511 | 0.71 | 0.898835 |
Target: 5'- aCGCCGUgGGcgUcgggGCUCGCGCGc -3' miRNA: 3'- gGCGGUAaCCuaAaaaaCGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 61939 | 0.71 | 0.902809 |
Target: 5'- gCGUCAgcGGcggcgcgGCCCGCGCGg -3' miRNA: 3'- gGCGGUaaCCuaaaaaaCGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 30040 | 0.7 | 0.923602 |
Target: 5'- gCCGCgGccgUGGGcgacgUUGCCgGCGCGg -3' miRNA: 3'- -GGCGgUa--ACCUaaaa-AACGGgCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 125071 | 0.7 | 0.910485 |
Target: 5'- gCGCgCGgcGGGgcgcuggGCCCGCGCGg -3' miRNA: 3'- gGCG-GUaaCCUaaaaaa-CGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 52407 | 0.7 | 0.916601 |
Target: 5'- gCGCCGUgcuccaGGcgcugg-GCCCGCGCGu -3' miRNA: 3'- gGCGGUAa-----CCuaaaaaaCGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 66150 | 0.7 | 0.928062 |
Target: 5'- gCGCaCGUgcUGGAcgUgcucucggccgUGCCCGCGCGg -3' miRNA: 3'- gGCG-GUA--ACCUaaAaa---------ACGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 120086 | 0.7 | 0.926963 |
Target: 5'- gCCGCgCGgggcgGGAgauaaagcGCCCGCGCGu -3' miRNA: 3'- -GGCG-GUaa---CCUaaaaaa--CGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 48812 | 0.7 | 0.934444 |
Target: 5'- gCGCCAUcggGGAUguccggGCcuugCCGCGCGg -3' miRNA: 3'- gGCGGUAa--CCUAaaaaa-CG----GGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 41260 | 0.7 | 0.934444 |
Target: 5'- gCUGCCAU-----UUUUUGCCgGCGCGc -3' miRNA: 3'- -GGCGGUAaccuaAAAAACGGgCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 88900 | 0.7 | 0.933406 |
Target: 5'- cCCGCCGggGGcggcucccUUGCgCGCGCGc -3' miRNA: 3'- -GGCGGUaaCCuaaaa---AACGgGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 54417 | 0.7 | 0.9313 |
Target: 5'- gCCGCgGUUGGccucggcgGCCCGgGCa -3' miRNA: 3'- -GGCGgUAACCuaaaaaa-CGGGCgCGc -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 87842 | 0.7 | 0.929152 |
Target: 5'- aCGCCGgcgGGcgUgaugGCCCGCGgGc -3' miRNA: 3'- gGCGGUaa-CCuaAaaaaCGGGCGCgC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 30715 | 0.7 | 0.929152 |
Target: 5'- gCGCUccUGGAc-----GCCCGCGCGg -3' miRNA: 3'- gGCGGuaACCUaaaaaaCGGGCGCGC- -5' |
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6487 | 5' | -50.9 | NC_001847.1 | + | 121447 | 0.7 | 0.928062 |
Target: 5'- aCCGCCGccGGGUUguuaaauggGUCuCGCGCGg -3' miRNA: 3'- -GGCGGUaaCCUAAaaaa-----CGG-GCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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