miRNA display CGI


Results 21 - 40 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 104972 0.66 0.728114
Target:  5'- gGCcaGGUCCGCCGagCGCCAcgcacccagggcGCaCGGCGc -3'
miRNA:   3'- -CGaaUCGGGCGGUg-GCGGU------------UG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 109343 0.66 0.728114
Target:  5'- ---aAGCCUggGCCACaGCCG-CCGGUGc -3'
miRNA:   3'- cgaaUCGGG--CGGUGgCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 79645 0.66 0.728114
Target:  5'- ----cGCUCGCCGCCGaaCCAcuGCCGGa- -3'
miRNA:   3'- cgaauCGGGCGGUGGC--GGU--UGGCCgc -5'
6490 3' -60.3 NC_001847.1 + 2888 0.66 0.728114
Target:  5'- gGCcgGGUgCGUCGCCGUUcgGGCCGGaCGg -3'
miRNA:   3'- -CGaaUCGgGCGGUGGCGG--UUGGCC-GC- -5'
6490 3' -60.3 NC_001847.1 + 7348 0.66 0.728114
Target:  5'- aGCgguggUAGCCgucaGCgCGCUGCU-GCCGGCGc -3'
miRNA:   3'- -CGa----AUCGGg---CG-GUGGCGGuUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 57200 0.66 0.727151
Target:  5'- cGCgc-GCCCGgCggcguuugcuacaGCCGCCcGCCGGUc -3'
miRNA:   3'- -CGaauCGGGCgG-------------UGGCGGuUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 116765 0.66 0.727151
Target:  5'- cGCggGGCCUGCuggguCugCGCCGACgaaugaaCGGCu -3'
miRNA:   3'- -CGaaUCGGGCG-----GugGCGGUUG-------GCCGc -5'
6490 3' -60.3 NC_001847.1 + 52763 0.66 0.727151
Target:  5'- ---cGGCCCGCC-CUGaCCAuugacaugguguaGCgCGGCGg -3'
miRNA:   3'- cgaaUCGGGCGGuGGC-GGU-------------UG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 104360 0.66 0.727151
Target:  5'- cGCccgGGCCgaagacgCGCCGCgagGCCAGCaCGGCGn -3'
miRNA:   3'- -CGaa-UCGG-------GCGGUGg--CGGUUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 1547 0.66 0.727151
Target:  5'- cGCccgGGCCgaagacgCGCCGCgagGCCAGCaCGGCGn -3'
miRNA:   3'- -CGaa-UCGG-------GCGGUGg--CGGUUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 40926 0.66 0.727151
Target:  5'- ---cGGCCUuuucguGCCGCCGCCGcaggucgaccaugGCCaGCGa -3'
miRNA:   3'- cgaaUCGGG------CGGUGGCGGU-------------UGGcCGC- -5'
6490 3' -60.3 NC_001847.1 + 66921 0.66 0.726187
Target:  5'- uGCUUgcGGcCCCGCCGCgGCCcgugcgcccccuACUGuGCGg -3'
miRNA:   3'- -CGAA--UC-GGGCGGUGgCGGu-----------UGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 116814 0.66 0.722323
Target:  5'- aCUgcGCCCGgCAgcugcuccgcgugauUCGCCGGCUGGCc -3'
miRNA:   3'- cGAauCGGGCgGU---------------GGCGGUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 6613 0.66 0.718447
Target:  5'- cGCUguuggAGUaaaGCCGCCGgUAGgCGGCGa -3'
miRNA:   3'- -CGAa----UCGgg-CGGUGGCgGUUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 92188 0.66 0.718447
Target:  5'- ---nGGCCCGCCcCCcCCGcGCgCGGCGu -3'
miRNA:   3'- cgaaUCGGGCGGuGGcGGU-UG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 73367 0.66 0.718447
Target:  5'- ---cGGCCCacccgcaccgcGCCACCGUUAACCcGUGg -3'
miRNA:   3'- cgaaUCGGG-----------CGGUGGCGGUUGGcCGC- -5'
6490 3' -60.3 NC_001847.1 + 78141 0.66 0.718447
Target:  5'- cGCgc-GCCgGCCugCGgcucauacCCAcCCGGCGa -3'
miRNA:   3'- -CGaauCGGgCGGugGC--------GGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 104869 0.66 0.718447
Target:  5'- ---aGGCCacgCGCCGCCGCagcgguGgCGGCGa -3'
miRNA:   3'- cgaaUCGG---GCGGUGGCGgu----UgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 35294 0.66 0.718447
Target:  5'- aCUgcGCa-GCC-CCGCCGAgCGGCGc -3'
miRNA:   3'- cGAauCGggCGGuGGCGGUUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 10695 0.66 0.718447
Target:  5'- cGCUU--CCCG-CACCGCCGGCCucggaggagGGCc -3'
miRNA:   3'- -CGAAucGGGCgGUGGCGGUUGG---------CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.