Results 21 - 40 of 952 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6490 | 3' | -60.3 | NC_001847.1 | + | 32587 | 0.66 | 0.689054 |
Target: 5'- aGCUgcGCCuaguCGCgGCCGCCGuCgCGGCc -3' miRNA: 3'- -CGAauCGG----GCGgUGGCGGUuG-GCCGc -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 34290 | 0.66 | 0.679155 |
Target: 5'- cGCcgcGCUCGCgGCCGUCAGCgaGGCu -3' miRNA: 3'- -CGaauCGGGCGgUGGCGGUUGg-CCGc -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 106519 | 0.66 | 0.669219 |
Target: 5'- gGCcgcgGGcCCCGCgGCCGCCGcguagcGCgCGGCc -3' miRNA: 3'- -CGaa--UC-GGGCGgUGGCGGU------UG-GCCGc -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 8229 | 0.66 | 0.689054 |
Target: 5'- ---cAGCUgCGCCACgCGCUGGCCuGCGg -3' miRNA: 3'- cgaaUCGG-GCGGUG-GCGGUUGGcCGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 18943 | 0.66 | 0.679155 |
Target: 5'- ---cAGCgCCGCCGCggCGuCCGGgCGGCGa -3' miRNA: 3'- cgaaUCG-GGCGGUG--GC-GGUUgGCCGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 50762 | 0.66 | 0.669219 |
Target: 5'- gGUUUGGCgCGCCAacgcggaGCCcGCuCGGCGu -3' miRNA: 3'- -CGAAUCGgGCGGUgg-----CGGuUG-GCCGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 2651 | 0.66 | 0.689054 |
Target: 5'- cGCUUGcggcGCCuuCGCCcgGCgGCuCGGCCGGCa -3' miRNA: 3'- -CGAAU----CGG--GCGG--UGgCG-GUUGGCCGc -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 101067 | 0.66 | 0.668224 |
Target: 5'- ---cGGCCCcgggGCCGCCGCgGGggccgggUCGGCGg -3' miRNA: 3'- cgaaUCGGG----CGGUGGCGgUU-------GGCCGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 133996 | 0.66 | 0.668224 |
Target: 5'- cGCUgccggAGCCgCGCgccgaggCGCCGCCG-CUGGUGc -3' miRNA: 3'- -CGAa----UCGG-GCG-------GUGGCGGUuGGCCGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 57094 | 0.66 | 0.689054 |
Target: 5'- cGCUgcGCUgGaCCGCCGCgCcGCCGcGCGc -3' miRNA: 3'- -CGAauCGGgC-GGUGGCG-GuUGGC-CGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 69207 | 0.66 | 0.689054 |
Target: 5'- cGUUUGGCgaCGCgACguuUGCCGucGCCGGCGc -3' miRNA: 3'- -CGAAUCGg-GCGgUG---GCGGU--UGGCCGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 16203 | 0.66 | 0.689054 |
Target: 5'- --cUGGCCCGC----GCCAugCGGCGu -3' miRNA: 3'- cgaAUCGGGCGguggCGGUugGCCGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 94219 | 0.66 | 0.679155 |
Target: 5'- gGCggAGCUCGCgGCggggCGCCcGCgCGGCGc -3' miRNA: 3'- -CGaaUCGGGCGgUG----GCGGuUG-GCCGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 119949 | 0.66 | 0.689054 |
Target: 5'- cGCggugcgGGUCCGCUGCCcagaaaGCCAaaaaagcuGCCGGCc -3' miRNA: 3'- -CGaa----UCGGGCGGUGG------CGGU--------UGGCCGc -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 24226 | 0.66 | 0.689054 |
Target: 5'- cGCUcGGCgaucuccacguUCaGCCGCCGCgCGGCgGGCGa -3' miRNA: 3'- -CGAaUCG-----------GG-CGGUGGCG-GUUGgCCGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 28025 | 0.66 | 0.669219 |
Target: 5'- cGCUUAcgagcGCCUGCacaCGCCAgacgcggcgcuGCUGGCGg -3' miRNA: 3'- -CGAAU-----CGGGCGgugGCGGU-----------UGGCCGC- -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 107085 | 0.66 | 0.669219 |
Target: 5'- cGCUUcggccuugaggGGCgCCGCCcCCGCC--UCGGCu -3' miRNA: 3'- -CGAA-----------UCG-GGCGGuGGCGGuuGGCCGc -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 124440 | 0.66 | 0.679155 |
Target: 5'- cGCUUGGCCgGCgCggGCCGCgcccgggcgCGACCGGa- -3' miRNA: 3'- -CGAAUCGGgCG-G--UGGCG---------GUUGGCCgc -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 25923 | 0.66 | 0.669219 |
Target: 5'- ----cGCCCGCCGacCCGCCGGCgcuUGGUu -3' miRNA: 3'- cgaauCGGGCGGU--GGCGGUUG---GCCGc -5' |
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6490 | 3' | -60.3 | NC_001847.1 | + | 49156 | 0.66 | 0.679155 |
Target: 5'- aGUUguuGCCgCGCCGCgucUGCCGACCauggacgcGGCGg -3' miRNA: 3'- -CGAau-CGG-GCGGUG---GCGGUUGG--------CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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