miRNA display CGI


Results 21 - 40 of 952 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 32587 0.66 0.689054
Target:  5'- aGCUgcGCCuaguCGCgGCCGCCGuCgCGGCc -3'
miRNA:   3'- -CGAauCGG----GCGgUGGCGGUuG-GCCGc -5'
6490 3' -60.3 NC_001847.1 + 34290 0.66 0.679155
Target:  5'- cGCcgcGCUCGCgGCCGUCAGCgaGGCu -3'
miRNA:   3'- -CGaauCGGGCGgUGGCGGUUGg-CCGc -5'
6490 3' -60.3 NC_001847.1 + 106519 0.66 0.669219
Target:  5'- gGCcgcgGGcCCCGCgGCCGCCGcguagcGCgCGGCc -3'
miRNA:   3'- -CGaa--UC-GGGCGgUGGCGGU------UG-GCCGc -5'
6490 3' -60.3 NC_001847.1 + 8229 0.66 0.689054
Target:  5'- ---cAGCUgCGCCACgCGCUGGCCuGCGg -3'
miRNA:   3'- cgaaUCGG-GCGGUG-GCGGUUGGcCGC- -5'
6490 3' -60.3 NC_001847.1 + 18943 0.66 0.679155
Target:  5'- ---cAGCgCCGCCGCggCGuCCGGgCGGCGa -3'
miRNA:   3'- cgaaUCG-GGCGGUG--GC-GGUUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 50762 0.66 0.669219
Target:  5'- gGUUUGGCgCGCCAacgcggaGCCcGCuCGGCGu -3'
miRNA:   3'- -CGAAUCGgGCGGUgg-----CGGuUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 2651 0.66 0.689054
Target:  5'- cGCUUGcggcGCCuuCGCCcgGCgGCuCGGCCGGCa -3'
miRNA:   3'- -CGAAU----CGG--GCGG--UGgCG-GUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 101067 0.66 0.668224
Target:  5'- ---cGGCCCcgggGCCGCCGCgGGggccgggUCGGCGg -3'
miRNA:   3'- cgaaUCGGG----CGGUGGCGgUU-------GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 133996 0.66 0.668224
Target:  5'- cGCUgccggAGCCgCGCgccgaggCGCCGCCG-CUGGUGc -3'
miRNA:   3'- -CGAa----UCGG-GCG-------GUGGCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 57094 0.66 0.689054
Target:  5'- cGCUgcGCUgGaCCGCCGCgCcGCCGcGCGc -3'
miRNA:   3'- -CGAauCGGgC-GGUGGCG-GuUGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 69207 0.66 0.689054
Target:  5'- cGUUUGGCgaCGCgACguuUGCCGucGCCGGCGc -3'
miRNA:   3'- -CGAAUCGg-GCGgUG---GCGGU--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 16203 0.66 0.689054
Target:  5'- --cUGGCCCGC----GCCAugCGGCGu -3'
miRNA:   3'- cgaAUCGGGCGguggCGGUugGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 94219 0.66 0.679155
Target:  5'- gGCggAGCUCGCgGCggggCGCCcGCgCGGCGc -3'
miRNA:   3'- -CGaaUCGGGCGgUG----GCGGuUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 119949 0.66 0.689054
Target:  5'- cGCggugcgGGUCCGCUGCCcagaaaGCCAaaaaagcuGCCGGCc -3'
miRNA:   3'- -CGaa----UCGGGCGGUGG------CGGU--------UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 24226 0.66 0.689054
Target:  5'- cGCUcGGCgaucuccacguUCaGCCGCCGCgCGGCgGGCGa -3'
miRNA:   3'- -CGAaUCG-----------GG-CGGUGGCG-GUUGgCCGC- -5'
6490 3' -60.3 NC_001847.1 + 28025 0.66 0.669219
Target:  5'- cGCUUAcgagcGCCUGCacaCGCCAgacgcggcgcuGCUGGCGg -3'
miRNA:   3'- -CGAAU-----CGGGCGgugGCGGU-----------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 107085 0.66 0.669219
Target:  5'- cGCUUcggccuugaggGGCgCCGCCcCCGCC--UCGGCu -3'
miRNA:   3'- -CGAA-----------UCG-GGCGGuGGCGGuuGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 124440 0.66 0.679155
Target:  5'- cGCUUGGCCgGCgCggGCCGCgcccgggcgCGACCGGa- -3'
miRNA:   3'- -CGAAUCGGgCG-G--UGGCG---------GUUGGCCgc -5'
6490 3' -60.3 NC_001847.1 + 25923 0.66 0.669219
Target:  5'- ----cGCCCGCCGacCCGCCGGCgcuUGGUu -3'
miRNA:   3'- cgaauCGGGCGGU--GGCGGUUG---GCCGc -5'
6490 3' -60.3 NC_001847.1 + 49156 0.66 0.679155
Target:  5'- aGUUguuGCCgCGCCGCgucUGCCGACCauggacgcGGCGg -3'
miRNA:   3'- -CGAau-CGG-GCGGUG---GCGGUUGG--------CCGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.