miRNA display CGI


Results 1 - 20 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 133996 0.66 0.668224
Target:  5'- cGCUgccggAGCCgCGCgccgaggCGCCGCCG-CUGGUGc -3'
miRNA:   3'- -CGAa----UCGG-GCG-------GUGGCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 124440 0.66 0.679155
Target:  5'- cGCUUGGCCgGCgCggGCCGCgcccgggcgCGACCGGa- -3'
miRNA:   3'- -CGAAUCGGgCG-G--UGGCG---------GUUGGCCgc -5'
6490 3' -60.3 NC_001847.1 + 46897 0.66 0.669219
Target:  5'- ----cGCCCGgCGCCcgcGCCGcGCCGGCc -3'
miRNA:   3'- cgaauCGGGCgGUGG---CGGU-UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 28025 0.66 0.669219
Target:  5'- cGCUUAcgagcGCCUGCacaCGCCAgacgcggcgcuGCUGGCGg -3'
miRNA:   3'- -CGAAU-----CGGGCGgugGCGGU-----------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 85228 0.66 0.669219
Target:  5'- ---gAGCCCGaCGaaGgCGGCCGGCGg -3'
miRNA:   3'- cgaaUCGGGCgGUggCgGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 94219 0.66 0.679155
Target:  5'- gGCggAGCUCGCgGCggggCGCCcGCgCGGCGc -3'
miRNA:   3'- -CGaaUCGGGCGgUG----GCGGuUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 117814 0.66 0.669219
Target:  5'- gGCUcggugUGGCCCugcaCCACaagaGCgGACCGGCc -3'
miRNA:   3'- -CGA-----AUCGGGc---GGUGg---CGgUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 81414 0.66 0.669219
Target:  5'- cGCUacGCCgcgCGCCGauCCGCCccgcgagccGCCGGCGg -3'
miRNA:   3'- -CGAauCGG---GCGGU--GGCGGu--------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 25923 0.66 0.669219
Target:  5'- ----cGCCCGCCGacCCGCCGGCgcuUGGUu -3'
miRNA:   3'- cgaauCGGGCGGU--GGCGGUUG---GCCGc -5'
6490 3' -60.3 NC_001847.1 + 49156 0.66 0.679155
Target:  5'- aGUUguuGCCgCGCCGCgucUGCCGACCauggacgcGGCGg -3'
miRNA:   3'- -CGAau-CGG-GCGGUG---GCGGUUGG--------CCGC- -5'
6490 3' -60.3 NC_001847.1 + 106519 0.66 0.669219
Target:  5'- gGCcgcgGGcCCCGCgGCCGCCGcguagcGCgCGGCc -3'
miRNA:   3'- -CGaa--UC-GGGCGgUGGCGGU------UG-GCCGc -5'
6490 3' -60.3 NC_001847.1 + 65752 0.66 0.679155
Target:  5'- aGCguggUGGCCCGCgGgCGCaAGCUGcGCGc -3'
miRNA:   3'- -CGa---AUCGGGCGgUgGCGgUUGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 80655 0.66 0.669219
Target:  5'- cGCgggAGaCCCGgCGCCggggaGCCGaacggcugcgcGCCGGCGg -3'
miRNA:   3'- -CGaa-UC-GGGCgGUGG-----CGGU-----------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 50762 0.66 0.669219
Target:  5'- gGUUUGGCgCGCCAacgcggaGCCcGCuCGGCGu -3'
miRNA:   3'- -CGAAUCGgGCGGUgg-----CGGuUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 107085 0.66 0.669219
Target:  5'- cGCUUcggccuugaggGGCgCCGCCcCCGCC--UCGGCu -3'
miRNA:   3'- -CGAA-----------UCG-GGCGGuGGCGGuuGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 8531 0.66 0.679155
Target:  5'- ----cGCCCGCCuCUGUC--CCGGCGu -3'
miRNA:   3'- cgaauCGGGCGGuGGCGGuuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 9800 0.66 0.679155
Target:  5'- uGCgucUGGCCgGCCGCUGgcguUCAGCgCGGCu -3'
miRNA:   3'- -CGa--AUCGGgCGGUGGC----GGUUG-GCCGc -5'
6490 3' -60.3 NC_001847.1 + 14074 0.66 0.678163
Target:  5'- uGCUUGGgCCGCucguggaCAUCGCgGaggcGCUGGCGg -3'
miRNA:   3'- -CGAAUCgGGCG-------GUGGCGgU----UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 101067 0.66 0.668224
Target:  5'- ---cGGCCCcgggGCCGCCGCgGGggccgggUCGGCGg -3'
miRNA:   3'- cgaaUCGGG----CGGUGGCGgUU-------GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 29246 0.66 0.679155
Target:  5'- uGCaUGGcCCCGCgGCCGCgCAcggacuacguGgCGGCGa -3'
miRNA:   3'- -CGaAUC-GGGCGgUGGCG-GU----------UgGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.