miRNA display CGI


Results 1 - 20 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 80 0.69 0.511291
Target:  5'- gGCccgGGCCCGCUcugggcuCCGCCccuggguCCGGCGc -3'
miRNA:   3'- -CGaa-UCGGGCGGu------GGCGGuu-----GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 198 0.69 0.540148
Target:  5'- cGCc---CCCGCCcCCGCCc-CCGGCGc -3'
miRNA:   3'- -CGaaucGGGCGGuGGCGGuuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 269 0.67 0.659255
Target:  5'- gGCccgAGCCCGgggGCCGCCGAgcCCGcGCGg -3'
miRNA:   3'- -CGaa-UCGGGCgg-UGGCGGUU--GGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 356 0.71 0.403473
Target:  5'- gGCUUcgcgccccggGGCCCGCC-CCGCgcGCCGcGCGc -3'
miRNA:   3'- -CGAA----------UCGGGCGGuGGCGguUGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 560 0.66 0.708708
Target:  5'- ---cGGCggaCGCCAgCGCCGcgucuCCGGCGc -3'
miRNA:   3'- cgaaUCGg--GCGGUgGCGGUu----GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 769 0.79 0.127411
Target:  5'- ---cGGCCCGCCGCCGgCGgcGCCGGCc -3'
miRNA:   3'- cgaaUCGGGCGGUGGCgGU--UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 905 0.83 0.072189
Target:  5'- cGCggccGCCgGCCGCCGCCcGCCGGCGc -3'
miRNA:   3'- -CGaau-CGGgCGGUGGCGGuUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 939 0.71 0.395147
Target:  5'- aGCccgAGCCCGCgcccggggacgaCugCGCCGgcacccggGCCGGCGg -3'
miRNA:   3'- -CGaa-UCGGGCG------------GugGCGGU--------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 1091 0.69 0.530463
Target:  5'- cGCcgGGCgCCGCgGCCGCgGG-CGGCGc -3'
miRNA:   3'- -CGaaUCG-GGCGgUGGCGgUUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 1168 0.75 0.241491
Target:  5'- aGCgcGGCCgcgcagaagGCCACCGCCGcgGCCGGCa -3'
miRNA:   3'- -CGaaUCGGg--------CGGUGGCGGU--UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 1219 0.66 0.728114
Target:  5'- aGCUccAGCgCgCGCCGCCcgcagGCCAgguacACCGGCc -3'
miRNA:   3'- -CGAa-UCG-G-GCGGUGG-----CGGU-----UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 1547 0.66 0.727151
Target:  5'- cGCccgGGCCgaagacgCGCCGCgagGCCAGCaCGGCGn -3'
miRNA:   3'- -CGaa-UCGG-------GCGGUGg--CGGUUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 1585 0.68 0.569533
Target:  5'- cGCgccAGCgCGCCGCUcggGCCAGCgcgCGGCGc -3'
miRNA:   3'- -CGaa-UCGgGCGGUGG---CGGUUG---GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 1729 0.75 0.230311
Target:  5'- ----cGCCgCGCCGCgGCCAGCCGcGCGc -3'
miRNA:   3'- cgaauCGG-GCGGUGgCGGUUGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 1837 0.67 0.639271
Target:  5'- gGCgc-GCCCGuCCAgCGCCcGGCCcaGGCGu -3'
miRNA:   3'- -CGaauCGGGC-GGUgGCGG-UUGG--CCGC- -5'
6490 3' -60.3 NC_001847.1 + 1915 0.76 0.201317
Target:  5'- uGCgagAGCCCGCCGCgGCgCGgcggccacucgggccGCCGGCGc -3'
miRNA:   3'- -CGaa-UCGGGCGGUGgCG-GU---------------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 1974 0.72 0.370847
Target:  5'- ---cGGCgCCGCCAgCGCCuccCCGGCa -3'
miRNA:   3'- cgaaUCG-GGCGGUgGCGGuu-GGCCGc -5'
6490 3' -60.3 NC_001847.1 + 2056 0.66 0.718447
Target:  5'- ---aGGCCacgCGCCGCCGCagcgguGgCGGCGa -3'
miRNA:   3'- cgaaUCGG---GCGGUGGCGgu----UgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 2173 0.68 0.589344
Target:  5'- cGCagcGCCCG-CGCCGCCuGGgCGGCGu -3'
miRNA:   3'- -CGaauCGGGCgGUGGCGG-UUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 2212 0.69 0.520842
Target:  5'- gGCggcagUAGgCCGCCAgCGCCG--CGGCGc -3'
miRNA:   3'- -CGa----AUCgGGCGGUgGCGGUugGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.