miRNA display CGI


Results 1 - 20 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 19875 1.1 0.00082
Target:  5'- gGCUUAGCCCGCCACCGCCAACCGGCGg -3'
miRNA:   3'- -CGAAUCGGGCGGUGGCGGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 69874 0.84 0.06006
Target:  5'- ---aGGCCCGCCGCUGCgGACCGGCc -3'
miRNA:   3'- cgaaUCGGGCGGUGGCGgUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 9623 0.84 0.064996
Target:  5'- aGCUgcGCCCGCCGCCGC--GCCGGCc -3'
miRNA:   3'- -CGAauCGGGCGGUGGCGguUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 905 0.83 0.072189
Target:  5'- cGCggccGCCgGCCGCCGCCcGCCGGCGc -3'
miRNA:   3'- -CGaau-CGGgCGGUGGCGGuUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 103718 0.83 0.072189
Target:  5'- cGCggccGCCgGCCGCCGCCcGCCGGCGc -3'
miRNA:   3'- -CGaau-CGGgCGGUGGCGGuUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 45274 0.83 0.074103
Target:  5'- gGCgaAGCCCGCCGCgGCgAGCCGGCc -3'
miRNA:   3'- -CGaaUCGGGCGGUGgCGgUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 92152 0.82 0.080143
Target:  5'- cGCggGGCCCGCCgacagcgaACCcggGCCGGCCGGCGg -3'
miRNA:   3'- -CGaaUCGGGCGG--------UGG---CGGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 65879 0.82 0.084428
Target:  5'- ---aAGCCCgcgGCCGCCGCCAGCCGcGCGu -3'
miRNA:   3'- cgaaUCGGG---CGGUGGCGGUUGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 71391 0.81 0.093662
Target:  5'- gGCcUGGCCCG-CGCCGCCAGgCGGCGc -3'
miRNA:   3'- -CGaAUCGGGCgGUGGCGGUUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 119901 0.81 0.101207
Target:  5'- uGCgUGG-CCGCCGCCGCCG-CCGGCGc -3'
miRNA:   3'- -CGaAUCgGGCGGUGGCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 98142 0.81 0.101207
Target:  5'- aGCUcgAGCgCGCCGCCGCCGcUCGGCGc -3'
miRNA:   3'- -CGAa-UCGgGCGGUGGCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 53913 0.81 0.103847
Target:  5'- aGCcUGGCCCGCCGCCGCUGccGCCGaGCc -3'
miRNA:   3'- -CGaAUCGGGCGGUGGCGGU--UGGC-CGc -5'
6490 3' -60.3 NC_001847.1 + 9824 0.8 0.106551
Target:  5'- gGCccGGCCCGCCGCCGCCAugaGCCacGGCc -3'
miRNA:   3'- -CGaaUCGGGCGGUGGCGGU---UGG--CCGc -5'
6490 3' -60.3 NC_001847.1 + 112637 0.8 0.106551
Target:  5'- gGCccGGCCCGCCGCCGCCAugaGCCacGGCc -3'
miRNA:   3'- -CGaaUCGGGCGGUGGCGGU---UGG--CCGc -5'
6490 3' -60.3 NC_001847.1 + 109776 0.8 0.106825
Target:  5'- ----cGCCCGCCGCCGCCcccugccaucagcuuGCCGGCGu -3'
miRNA:   3'- cgaauCGGGCGGUGGCGGu--------------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 123458 0.8 0.109042
Target:  5'- gGCUUGGCCCggcgacgGCCGCCGCgGGCuCGGCu -3'
miRNA:   3'- -CGAAUCGGG-------CGGUGGCGgUUG-GCCGc -5'
6490 3' -60.3 NC_001847.1 + 18429 0.8 0.118044
Target:  5'- cCUUGGCCacgugCGCCGCgGCCAGCCGuGCGg -3'
miRNA:   3'- cGAAUCGG-----GCGGUGgCGGUUGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 103184 0.8 0.121093
Target:  5'- aCggGGCCCGCCGCCGCCG--CGGCa -3'
miRNA:   3'- cGaaUCGGGCGGUGGCGGUugGCCGc -5'
6490 3' -60.3 NC_001847.1 + 106129 0.79 0.124215
Target:  5'- gGCgcgGGCgCCGCUGCCGCCGgcGCCGGCc -3'
miRNA:   3'- -CGaa-UCG-GGCGGUGGCGGU--UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 3316 0.79 0.124215
Target:  5'- gGCgcgGGCgCCGCUGCCGCCGgcGCCGGCc -3'
miRNA:   3'- -CGaa-UCG-GGCGGUGGCGGU--UGGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.