miRNA display CGI


Results 1 - 20 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 103718 0.83 0.072189
Target:  5'- cGCggccGCCgGCCGCCGCCcGCCGGCGc -3'
miRNA:   3'- -CGaau-CGGgCGGUGGCGGuUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 133718 0.78 0.151996
Target:  5'- cGCgccugGGCCCGCCACCGCgGugcccgugccGCCGcGCGa -3'
miRNA:   3'- -CGaa---UCGGGCGGUGGCGgU----------UGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 90846 0.78 0.151996
Target:  5'- cGC-UGGCCCGCCGCgccgCGCCGcgccGCCGGUGu -3'
miRNA:   3'- -CGaAUCGGGCGGUG----GCGGU----UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 66212 0.78 0.151996
Target:  5'- gGCgcAGCCCGCgGCCGCCGcgccgaaccucaGCgCGGCGg -3'
miRNA:   3'- -CGaaUCGGGCGgUGGCGGU------------UG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 81178 0.78 0.151996
Target:  5'- cGCUcggagGGCUCGCgGCggCGCCAGCCGGCGc -3'
miRNA:   3'- -CGAa----UCGGGCGgUG--GCGGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 131985 0.78 0.148237
Target:  5'- cGCUggaggcGGCCCGCCG-CGCCG-CCGGCGc -3'
miRNA:   3'- -CGAa-----UCGGGCGGUgGCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 131324 0.78 0.148237
Target:  5'- gGCgUGGCCCggcagcgcGCCGCCGCCGcCCGGCc -3'
miRNA:   3'- -CGaAUCGGG--------CGGUGGCGGUuGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 13131 0.78 0.148237
Target:  5'- gGCggcGCCgCGCCGCCuGCCGcgGCCGGCGg -3'
miRNA:   3'- -CGaauCGG-GCGGUGG-CGGU--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 25880 0.79 0.140971
Target:  5'- cGCUUgcAGCCCGCCcCUGCCGACCcgcuGGCu -3'
miRNA:   3'- -CGAA--UCGGGCGGuGGCGGUUGG----CCGc -5'
6490 3' -60.3 NC_001847.1 + 83613 0.79 0.130684
Target:  5'- cGCcugGGCgCCGCCcCCGCCuGCCGGCGc -3'
miRNA:   3'- -CGaa-UCG-GGCGGuGGCGGuUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 103582 0.79 0.127411
Target:  5'- ---cGGCCCGCCGCCGgCGgcGCCGGCc -3'
miRNA:   3'- cgaaUCGGGCGGUGGCgGU--UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 105929 0.79 0.127088
Target:  5'- ---cGGCCCGCCGCgGCCGAgagcaccgggagcCCGGCGg -3'
miRNA:   3'- cgaaUCGGGCGGUGgCGGUU-------------GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 106129 0.79 0.124215
Target:  5'- gGCgcgGGCgCCGCUGCCGCCGgcGCCGGCc -3'
miRNA:   3'- -CGaa-UCG-GGCGGUGGCGGU--UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 18429 0.8 0.118044
Target:  5'- cCUUGGCCacgugCGCCGCgGCCAGCCGuGCGg -3'
miRNA:   3'- cGAAUCGG-----GCGGUGgCGGUUGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 109776 0.8 0.106825
Target:  5'- ----cGCCCGCCGCCGCCcccugccaucagcuuGCCGGCGu -3'
miRNA:   3'- cgaauCGGGCGGUGGCGGu--------------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 112637 0.8 0.106551
Target:  5'- gGCccGGCCCGCCGCCGCCAugaGCCacGGCc -3'
miRNA:   3'- -CGaaUCGGGCGGUGGCGGU---UGG--CCGc -5'
6490 3' -60.3 NC_001847.1 + 119901 0.81 0.101207
Target:  5'- uGCgUGG-CCGCCGCCGCCG-CCGGCGc -3'
miRNA:   3'- -CGaAUCgGGCGGUGGCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 92152 0.82 0.080143
Target:  5'- cGCggGGCCCGCCgacagcgaACCcggGCCGGCCGGCGg -3'
miRNA:   3'- -CGaaUCGGGCGG--------UGG---CGGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 45274 0.83 0.074103
Target:  5'- gGCgaAGCCCGCCGCgGCgAGCCGGCc -3'
miRNA:   3'- -CGaaUCGGGCGGUGgCGgUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 9623 0.84 0.064996
Target:  5'- aGCUgcGCCCGCCGCCGC--GCCGGCc -3'
miRNA:   3'- -CGAauCGGGCGGUGGCGguUGGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.