miRNA display CGI


Results 1 - 20 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 36120 0.66 0.718447
Target:  5'- gGCgguGCUCGCCGCCcgaggcagcGCUGugguacgaggacACCGGCGa -3'
miRNA:   3'- -CGaauCGGGCGGUGG---------CGGU------------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 104972 0.66 0.728114
Target:  5'- gGCcaGGUCCGCCGagCGCCAcgcacccagggcGCaCGGCGc -3'
miRNA:   3'- -CGaaUCGGGCGGUg-GCGGU------------UG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 15539 0.66 0.728114
Target:  5'- cGCg-GGCCuCGUCGUCGCCGGgUGGCGc -3'
miRNA:   3'- -CGaaUCGG-GCGGUGGCGGUUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 1219 0.66 0.728114
Target:  5'- aGCUccAGCgCgCGCCGCCcgcagGCCAgguacACCGGCc -3'
miRNA:   3'- -CGAa-UCG-G-GCGGUGG-----CGGU-----UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 1547 0.66 0.727151
Target:  5'- cGCccgGGCCgaagacgCGCCGCgagGCCAGCaCGGCGn -3'
miRNA:   3'- -CGaa-UCGG-------GCGGUGg--CGGUUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 102470 0.66 0.728114
Target:  5'- aGCUcgagcgGGCCCG-CGCCGCCGgcGCCGu-- -3'
miRNA:   3'- -CGAa-----UCGGGCgGUGGCGGU--UGGCcgc -5'
6490 3' -60.3 NC_001847.1 + 31436 0.66 0.728114
Target:  5'- ---cGGCCgGCgGCCGCgGcggccCCGGCGc -3'
miRNA:   3'- cgaaUCGGgCGgUGGCGgUu----GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 6530 0.66 0.728114
Target:  5'- ---aAGCCUggGCCACaGCCG-CCGGUGc -3'
miRNA:   3'- cgaaUCGGG--CGGUGgCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 89878 0.66 0.718447
Target:  5'- cGCggcgGGCuUCGCCG-CGCuCAcGCCGGCGg -3'
miRNA:   3'- -CGaa--UCG-GGCGGUgGCG-GU-UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 131542 0.66 0.718447
Target:  5'- uGUUUGGUCUuuGCCGCaacgaCGCCGAcuuccucagccCCGGCGg -3'
miRNA:   3'- -CGAAUCGGG--CGGUG-----GCGGUU-----------GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 19875 1.1 0.00082
Target:  5'- gGCUUAGCCCGCCACCGCCAACCGGCGg -3'
miRNA:   3'- -CGAAUCGGGCGGUGGCGGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 78095 0.66 0.728114
Target:  5'- aGCUUAG-CCGCCuCgGCCcACagGGCGc -3'
miRNA:   3'- -CGAAUCgGGCGGuGgCGGuUGg-CCGC- -5'
6490 3' -60.3 NC_001847.1 + 96485 0.66 0.728114
Target:  5'- gGCggcgGGCgUCGCCACgG-CAACgCGGCGg -3'
miRNA:   3'- -CGaa--UCG-GGCGGUGgCgGUUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 66921 0.66 0.726187
Target:  5'- uGCUUgcGGcCCCGCCGCgGCCcgugcgcccccuACUGuGCGg -3'
miRNA:   3'- -CGAA--UC-GGGCGGUGgCGGu-----------UGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 103341 0.66 0.718447
Target:  5'- ----cGCgCCGcCCACCGCCAcgGCCguaaGGCa -3'
miRNA:   3'- cgaauCG-GGC-GGUGGCGGU--UGG----CCGc -5'
6490 3' -60.3 NC_001847.1 + 65910 0.66 0.728114
Target:  5'- ---aGGCCagCGUUGCCGCgGcGCCGGCGa -3'
miRNA:   3'- cgaaUCGG--GCGGUGGCGgU-UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 13775 0.66 0.718447
Target:  5'- cGCcuuGCCCGCUccccaccCCGCCcGCCGcGCa -3'
miRNA:   3'- -CGaauCGGGCGGu------GGCGGuUGGC-CGc -5'
6490 3' -60.3 NC_001847.1 + 129214 0.66 0.718447
Target:  5'- cGCUU-GCUCGCggcgACCGCUAAUgGGCc -3'
miRNA:   3'- -CGAAuCGGGCGg---UGGCGGUUGgCCGc -5'
6490 3' -60.3 NC_001847.1 + 29085 0.66 0.728114
Target:  5'- ----nGCCCcuGCCGCCgGCgAGCaCGGCGc -3'
miRNA:   3'- cgaauCGGG--CGGUGG-CGgUUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 116765 0.66 0.727151
Target:  5'- cGCggGGCCUGCuggguCugCGCCGACgaaugaaCGGCu -3'
miRNA:   3'- -CGaaUCGGGCG-----GugGCGGUUG-------GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.