miRNA display CGI


Results 21 - 40 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 104972 0.66 0.728114
Target:  5'- gGCcaGGUCCGCCGagCGCCAcgcacccagggcGCaCGGCGc -3'
miRNA:   3'- -CGaaUCGGGCGGUg-GCGGU------------UG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 49903 0.66 0.708708
Target:  5'- cGCgcaccUGGCgCCGCCgGCCGCCuucguCgGGCu -3'
miRNA:   3'- -CGa----AUCG-GGCGG-UGGCGGuu---GgCCGc -5'
6490 3' -60.3 NC_001847.1 + 93516 0.66 0.708708
Target:  5'- ---cGGCgCGCCGCUcgcgGCCAucaCGGCGg -3'
miRNA:   3'- cgaaUCGgGCGGUGG----CGGUug-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 91630 0.66 0.718447
Target:  5'- ---aAGCCCGCgcgCGCCGCCcaguAGCgaucgaCGGCGg -3'
miRNA:   3'- cgaaUCGGGCG---GUGGCGG----UUG------GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 66921 0.66 0.726187
Target:  5'- uGCUUgcGGcCCCGCCGCgGCCcgugcgcccccuACUGuGCGg -3'
miRNA:   3'- -CGAA--UC-GGGCGGUGgCGGu-----------UGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 560 0.66 0.708708
Target:  5'- ---cGGCggaCGCCAgCGCCGcgucuCCGGCGc -3'
miRNA:   3'- cgaaUCGg--GCGGUgGCGGUu----GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 30728 0.66 0.708708
Target:  5'- gGCgcAGUgCGCCGCgCGCUGGCCcgagcGGCGc -3'
miRNA:   3'- -CGaaUCGgGCGGUG-GCGGUUGG-----CCGC- -5'
6490 3' -60.3 NC_001847.1 + 6530 0.66 0.728114
Target:  5'- ---aAGCCUggGCCACaGCCG-CCGGUGc -3'
miRNA:   3'- cgaaUCGGG--CGGUGgCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 54813 0.66 0.718447
Target:  5'- aGC-UGGCgCCGCUguuuGCCGCCA--CGGCc -3'
miRNA:   3'- -CGaAUCG-GGCGG----UGGCGGUugGCCGc -5'
6490 3' -60.3 NC_001847.1 + 50778 0.66 0.718447
Target:  5'- ---cGGUCCGCgGCCGCuCAAUacaccucgCGGCGc -3'
miRNA:   3'- cgaaUCGGGCGgUGGCG-GUUG--------GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 31436 0.66 0.728114
Target:  5'- ---cGGCCgGCgGCCGCgGcggccCCGGCGc -3'
miRNA:   3'- cgaaUCGGgCGgUGGCGgUu----GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 65910 0.66 0.728114
Target:  5'- ---aGGCCagCGUUGCCGCgGcGCCGGCGa -3'
miRNA:   3'- cgaaUCGG--GCGGUGGCGgU-UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 83197 0.66 0.708708
Target:  5'- cGCggGGUCgCGCgGCCGUCGcgccCCGGCc -3'
miRNA:   3'- -CGaaUCGG-GCGgUGGCGGUu---GGCCGc -5'
6490 3' -60.3 NC_001847.1 + 131405 0.66 0.708708
Target:  5'- aGCgcuGCaCgGCCGCgugcgCGCCGugGCCGGCGc -3'
miRNA:   3'- -CGaauCG-GgCGGUG-----GCGGU--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 96933 0.66 0.708708
Target:  5'- cGCguaUAGCggGUCGCCGCUAG-CGGCGg -3'
miRNA:   3'- -CGa--AUCGggCGGUGGCGGUUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 36120 0.66 0.718447
Target:  5'- gGCgguGCUCGCCGCCcgaggcagcGCUGugguacgaggacACCGGCGa -3'
miRNA:   3'- -CGaauCGGGCGGUGG---------CGGU------------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 103341 0.66 0.718447
Target:  5'- ----cGCgCCGcCCACCGCCAcgGCCguaaGGCa -3'
miRNA:   3'- cgaauCG-GGC-GGUGGCGGU--UGG----CCGc -5'
6490 3' -60.3 NC_001847.1 + 78095 0.66 0.728114
Target:  5'- aGCUUAG-CCGCCuCgGCCcACagGGCGc -3'
miRNA:   3'- -CGAAUCgGGCGGuGgCGGuUGg-CCGC- -5'
6490 3' -60.3 NC_001847.1 + 56457 0.66 0.718447
Target:  5'- uGCU--GCCCGgCACCagcGCCcgcgugcgcacGCCGGCGa -3'
miRNA:   3'- -CGAauCGGGCgGUGG---CGGu----------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 50334 0.66 0.717476
Target:  5'- ---aGGCCCcccggGCUGCCGCUAggguaaaGCUGGCGc -3'
miRNA:   3'- cgaaUCGGG-----CGGUGGCGGU-------UGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.