miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 5' -53.8 NC_001847.1 + 35299 0.66 0.949755
Target:  5'- uGCGUGGgCGGgGGCggGCAACgcaaaGCa -3'
miRNA:   3'- uCGCACCaGCUgCCGa-UGUUGaa---CGa -5'
6490 5' -53.8 NC_001847.1 + 111028 0.66 0.949755
Target:  5'- cGCGcGGgcucaugccguUCGACGGCUACGAgg-GCg -3'
miRNA:   3'- uCGCaCC-----------AGCUGCCGAUGUUgaaCGa -5'
6490 5' -53.8 NC_001847.1 + 125536 0.66 0.949755
Target:  5'- gGGCGcagcuacGGUCGuccccGCGGCUGCGGCUcgaucGCg -3'
miRNA:   3'- -UCGCa------CCAGC-----UGCCGAUGUUGAa----CGa -5'
6490 5' -53.8 NC_001847.1 + 43806 0.66 0.949755
Target:  5'- cGCGccGGUCGAgGGCgACGGCggccGCUu -3'
miRNA:   3'- uCGCa-CCAGCUgCCGaUGUUGaa--CGA- -5'
6490 5' -53.8 NC_001847.1 + 16616 0.66 0.949323
Target:  5'- uGCGUGGUCuuuggggGGgGGCgcgGCGGCUuUGCc -3'
miRNA:   3'- uCGCACCAG-------CUgCCGa--UGUUGA-ACGa -5'
6490 5' -53.8 NC_001847.1 + 115226 0.66 0.945332
Target:  5'- uGCGgcaGGUCGGCGGCgACGcCcucgUGCg -3'
miRNA:   3'- uCGCa--CCAGCUGCCGaUGUuGa---ACGa -5'
6490 5' -53.8 NC_001847.1 + 77292 0.66 0.945332
Target:  5'- cGCGUGGU-GAuCGGgUACAGCgccuucauggggUUGCUg -3'
miRNA:   3'- uCGCACCAgCU-GCCgAUGUUG------------AACGA- -5'
6490 5' -53.8 NC_001847.1 + 123799 0.66 0.945332
Target:  5'- uGCGcGG-CGGCGGCaGCGGCagGCg -3'
miRNA:   3'- uCGCaCCaGCUGCCGaUGUUGaaCGa -5'
6490 5' -53.8 NC_001847.1 + 116370 0.66 0.945332
Target:  5'- uGCGUGGUgcUGGCGcGCUACcgcgagGACcUGCa -3'
miRNA:   3'- uCGCACCA--GCUGC-CGAUG------UUGaACGa -5'
6490 5' -53.8 NC_001847.1 + 123708 0.66 0.935741
Target:  5'- uGGCGcggGGUCGcACGGCaGCA-CUUcGCUc -3'
miRNA:   3'- -UCGCa--CCAGC-UGCCGaUGUuGAA-CGA- -5'
6490 5' -53.8 NC_001847.1 + 33148 0.66 0.935741
Target:  5'- gAGUG-GGUCGAgGGCgcucugguggGCAGCUuUGCc -3'
miRNA:   3'- -UCGCaCCAGCUgCCGa---------UGUUGA-ACGa -5'
6490 5' -53.8 NC_001847.1 + 80236 0.66 0.933702
Target:  5'- cGCGggccacguugccgGGUCGACGGCgugccGCAGCaggGCc -3'
miRNA:   3'- uCGCa------------CCAGCUGCCGa----UGUUGaa-CGa -5'
6490 5' -53.8 NC_001847.1 + 78188 0.66 0.930568
Target:  5'- cGCGUGcGUaggcuucucgCGGCGGCUGCGG--UGCa -3'
miRNA:   3'- uCGCAC-CA----------GCUGCCGAUGUUgaACGa -5'
6490 5' -53.8 NC_001847.1 + 17288 0.66 0.930568
Target:  5'- cGCGUGGagcgCGGCGGgUAguACUcgGCg -3'
miRNA:   3'- uCGCACCa---GCUGCCgAUguUGAa-CGa -5'
6490 5' -53.8 NC_001847.1 + 57593 0.66 0.930568
Target:  5'- cGCGUGGUCaaGACGGacgGCAAUaugGCc -3'
miRNA:   3'- uCGCACCAG--CUGCCga-UGUUGaa-CGa -5'
6490 5' -53.8 NC_001847.1 + 63859 0.67 0.925143
Target:  5'- cGCGggGGgcgcaugcgCGACGGCUGgGACgcGCUg -3'
miRNA:   3'- uCGCa-CCa--------GCUGCCGAUgUUGaaCGA- -5'
6490 5' -53.8 NC_001847.1 + 27734 0.67 0.925143
Target:  5'- cGGCGgaagccgcGG-CGGCGGUUGCGGCgggggGCUg -3'
miRNA:   3'- -UCGCa-------CCaGCUGCCGAUGUUGaa---CGA- -5'
6490 5' -53.8 NC_001847.1 + 19631 0.67 0.925143
Target:  5'- gGGCGccgGcGUCGGCGcGCgGCcGCUUGCg -3'
miRNA:   3'- -UCGCa--C-CAGCUGC-CGaUGuUGAACGa -5'
6490 5' -53.8 NC_001847.1 + 53828 0.67 0.919465
Target:  5'- gGGCGcggcUGG-CGGCGGCaGCGGCggcGCUg -3'
miRNA:   3'- -UCGC----ACCaGCUGCCGaUGUUGaa-CGA- -5'
6490 5' -53.8 NC_001847.1 + 87757 0.67 0.919465
Target:  5'- cGUGcGGcUCGACGGCUACGGgaaGCUa -3'
miRNA:   3'- uCGCaCC-AGCUGCCGAUGUUgaaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.