miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 3' -52.8 NC_001847.1 + 22619 0.71 0.818121
Target:  5'- aGCgagUGGCCGCGcagGGCGc-GUCCGGGg -3'
miRNA:   3'- -CGa--ACUGGUGCaa-CCGCacCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 22415 0.71 0.800063
Target:  5'- uGCUcGuCCGCGggGGCGgGGcCCGAGa -3'
miRNA:   3'- -CGAaCuGGUGCaaCCGCaCCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 81812 0.75 0.618078
Target:  5'- cGCUUu-CCGCugcGGCGUGGUCCAGGc -3'
miRNA:   3'- -CGAAcuGGUGcaaCCGCACCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 111050 0.74 0.639095
Target:  5'- ---cGGCUACGagGGCGUGGUCCu-- -3'
miRNA:   3'- cgaaCUGGUGCaaCCGCACCAGGuuc -5'
6492 3' -52.8 NC_001847.1 + 102146 0.68 0.921341
Target:  5'- cGCgcGACCACGgcGGCGcGGcCCGc- -3'
miRNA:   3'- -CGaaCUGGUGCaaCCGCaCCaGGUuc -5'
6492 3' -52.8 NC_001847.1 + 113616 0.68 0.932265
Target:  5'- aGCUUGGgCGCGUUGGCccgcgcGGcccccgCCGAGg -3'
miRNA:   3'- -CGAACUgGUGCAACCGca----CCa-----GGUUC- -5'
6492 3' -52.8 NC_001847.1 + 13247 0.67 0.937844
Target:  5'- aGCggGGCCACGcgGGCGguucgcaggcaggccGcGUCCAGGg -3'
miRNA:   3'- -CGaaCUGGUGCaaCCGCa--------------C-CAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 81939 0.67 0.952772
Target:  5'- aGCUUGACgGCGUcgaggUGGCGgcgcgccacagccgGGUCgCAGc -3'
miRNA:   3'- -CGAACUGgUGCA-----ACCGCa-------------CCAG-GUUc -5'
6492 3' -52.8 NC_001847.1 + 116713 0.66 0.962678
Target:  5'- gGC-UGGCCGCGgcGcaCGUGG-CCAAGg -3'
miRNA:   3'- -CGaACUGGUGCaaCc-GCACCaGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 31246 0.66 0.962678
Target:  5'- ---cGGCCGCGgcgcccGGCGUGGaCUggGa -3'
miRNA:   3'- cgaaCUGGUGCaa----CCGCACCaGGuuC- -5'
6492 3' -52.8 NC_001847.1 + 29649 0.66 0.966071
Target:  5'- cGCgggcgGACC-CGgaGGaCG-GGUCCGAGg -3'
miRNA:   3'- -CGaa---CUGGuGCaaCC-GCaCCAGGUUC- -5'
6492 3' -52.8 NC_001847.1 + 42128 0.66 0.966071
Target:  5'- cGCUUc-CCGCGUUGGCGagagcUGGcCCGGc -3'
miRNA:   3'- -CGAAcuGGUGCAACCGC-----ACCaGGUUc -5'
6492 3' -52.8 NC_001847.1 + 131158 0.66 0.972192
Target:  5'- aCUUGGCCGCGcUGGCGcugcucacGGcCCAc- -3'
miRNA:   3'- cGAACUGGUGCaACCGCa-------CCaGGUuc -5'
6492 3' -52.8 NC_001847.1 + 18830 1.12 0.003262
Target:  5'- aGCUUGACCACGUUGGCGUGGUCCAAGg -3'
miRNA:   3'- -CGAACUGGUGCAACCGCACCAGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.