Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6493 | 3' | -47.7 | NC_001847.1 | + | 64689 | 0.66 | 0.999442 |
Target: 5'- cCCGCGCgUgucgcaGUGCgUCAGgcgcgGCa -3' miRNA: 3'- -GGCGCGgAaua---UACGgAGUCaaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 66228 | 0.66 | 0.999442 |
Target: 5'- gCCGCGCCgaa----CCUCAGcgcgGCg -3' miRNA: 3'- -GGCGCGGaauauacGGAGUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 67198 | 0.67 | 0.998103 |
Target: 5'- gCCGCGgC-UGUGUGCCgUC-GUgcUGCg -3' miRNA: 3'- -GGCGCgGaAUAUACGG-AGuCAaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 72085 | 0.66 | 0.999305 |
Target: 5'- cCCGCGCCUc----GCC-CAGcUUUUGg -3' miRNA: 3'- -GGCGCGGAauauaCGGaGUC-AAAACg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 73546 | 0.66 | 0.999647 |
Target: 5'- aCCGCGCgUacUcgGCCUUugAGUgcgcggUGCu -3' miRNA: 3'- -GGCGCGgAauAuaCGGAG--UCAaa----ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 74287 | 0.66 | 0.999647 |
Target: 5'- cUCGCGCUg-----GCCUCGGcgg-GCg -3' miRNA: 3'- -GGCGCGGaauauaCGGAGUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 75140 | 0.69 | 0.990503 |
Target: 5'- cCCGCcgggGCCggcgGUGCuCUCGGUuagguUUUGCa -3' miRNA: 3'- -GGCG----CGGaauaUACG-GAGUCA-----AAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 75300 | 0.68 | 0.996172 |
Target: 5'- aCCGCGCCUggccgGUGCCcCGcgag-GCg -3' miRNA: 3'- -GGCGCGGAaua--UACGGaGUcaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 76795 | 0.72 | 0.960119 |
Target: 5'- cCCGCGCCUggccgcccucUGCUggCAGUUUgUGCa -3' miRNA: 3'- -GGCGCGGAauau------ACGGa-GUCAAA-ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 77167 | 0.66 | 0.999612 |
Target: 5'- aCCGCGCCgguccUGCCUCccgacgccGCg -3' miRNA: 3'- -GGCGCGGaauauACGGAGucaaaa--CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 79103 | 0.67 | 0.99843 |
Target: 5'- gCCGCGCC----GUGCCUguGgaagaagGCc -3' miRNA: 3'- -GGCGCGGaauaUACGGAguCaaaa---CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 84078 | 0.71 | 0.979213 |
Target: 5'- cCCGCGCacgaac-GCCUCGGUggccUGCu -3' miRNA: 3'- -GGCGCGgaauauaCGGAGUCAaa--ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 85755 | 0.66 | 0.999555 |
Target: 5'- cCCGCGCCacccaggccgGUA-GUCUUAGUgccgGCg -3' miRNA: 3'- -GGCGCGGaa--------UAUaCGGAGUCAaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 86680 | 0.67 | 0.998876 |
Target: 5'- gCCGCGCgCUUu--UGCCUCAccuucacgcccucgGUgcuggUGCu -3' miRNA: 3'- -GGCGCG-GAAuauACGGAGU--------------CAaa---ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 87602 | 0.68 | 0.997277 |
Target: 5'- cCCGCGCCcgccGUGCUggAGUUUgacaGCg -3' miRNA: 3'- -GGCGCGGaauaUACGGagUCAAAa---CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 88389 | 0.67 | 0.998103 |
Target: 5'- aCCGCGCC----AUGCC--GGUUUcGCa -3' miRNA: 3'- -GGCGCGGaauaUACGGagUCAAAaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 89288 | 0.71 | 0.972864 |
Target: 5'- gCGCGCCgcggccgagGCCUCGGccgUGCc -3' miRNA: 3'- gGCGCGGaauaua---CGGAGUCaaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 91515 | 0.68 | 0.996764 |
Target: 5'- cCCGCGCCcuguaAUGUGCUUgAGg---GCc -3' miRNA: 3'- -GGCGCGGaa---UAUACGGAgUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 97853 | 0.7 | 0.981939 |
Target: 5'- gCGCGCCUUAUAcaaUGCUcCAGUcgacGCc -3' miRNA: 3'- gGCGCGGAAUAU---ACGGaGUCAaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 99158 | 0.67 | 0.998943 |
Target: 5'- gCGCGCCUUGUGgcgccaGCCggCGGga--GCc -3' miRNA: 3'- gGCGCGGAAUAUa-----CGGa-GUCaaaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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