miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 3' -47.7 NC_001847.1 + 35653 0.66 0.999442
Target:  5'- aCCGCGCC------GCCUCGGcg--GCc -3'
miRNA:   3'- -GGCGCGGaauauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 37779 0.74 0.91754
Target:  5'- cUCGCGCCUgaucAUGUGCCUgCGGcugUUUGa -3'
miRNA:   3'- -GGCGCGGAa---UAUACGGA-GUCa--AAACg -5'
6493 3' -47.7 NC_001847.1 + 37978 0.68 0.996172
Target:  5'- gCGCGCCgccc-UGCCUCA-UUaUGCu -3'
miRNA:   3'- gGCGCGGaauauACGGAGUcAAaACG- -5'
6493 3' -47.7 NC_001847.1 + 39756 0.67 0.998708
Target:  5'- cCCgGCGCCg-----GCCUCAGagccgGCg -3'
miRNA:   3'- -GG-CGCGGaauauaCGGAGUCaaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 40096 0.89 0.241909
Target:  5'- gCCGCGCCg---GUGCCUCGGUUgguaggUGCg -3'
miRNA:   3'- -GGCGCGGaauaUACGGAGUCAAa-----ACG- -5'
6493 3' -47.7 NC_001847.1 + 40654 0.7 0.989116
Target:  5'- gCCGCGCCUcgcg-GCCUuCuGUacUUUGCc -3'
miRNA:   3'- -GGCGCGGAauauaCGGA-GuCA--AAACG- -5'
6493 3' -47.7 NC_001847.1 + 42153 0.66 0.99914
Target:  5'- cCCgGCGCCUggacguUGCCggCGGg--UGCu -3'
miRNA:   3'- -GG-CGCGGAauau--ACGGa-GUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 44708 0.67 0.998103
Target:  5'- aCCGCGCgCUUAUuuugGCCUacg---UGCa -3'
miRNA:   3'- -GGCGCG-GAAUAua--CGGAgucaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 46906 0.75 0.860205
Target:  5'- cCCGCGCCgcgccgGCCUCGGcuccgGCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGAGUCaaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 47014 0.71 0.974568
Target:  5'- gCGCGCCUUGUG-GCUcaUCAGcag-GCg -3'
miRNA:   3'- gGCGCGGAAUAUaCGG--AGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 47555 0.7 0.987577
Target:  5'- aCgGCGCCg-----GCCUCGGUga-GCa -3'
miRNA:   3'- -GgCGCGGaauauaCGGAGUCAaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 48391 0.66 0.999442
Target:  5'- gCCGgGCCgg----GCCUCGGcg--GCa -3'
miRNA:   3'- -GGCgCGGaauauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 50123 0.72 0.953685
Target:  5'- -aGCGCCggcug-GCCUCGGUgaugGCg -3'
miRNA:   3'- ggCGCGGaauauaCGGAGUCAaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 52593 0.72 0.949327
Target:  5'- aCCGCGCgcgGUGcGCUUCGGUagUGCg -3'
miRNA:   3'- -GGCGCGgaaUAUaCGGAGUCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 53575 0.67 0.998807
Target:  5'- gCCGCGCUgggcgacguggAUGCCUU---UUUGCg -3'
miRNA:   3'- -GGCGCGGaaua-------UACGGAGucaAAACG- -5'
6493 3' -47.7 NC_001847.1 + 53661 0.74 0.897988
Target:  5'- gCCGUGUCUgGUGUGCUUCgAGgagcUUUGCg -3'
miRNA:   3'- -GGCGCGGAaUAUACGGAG-UCa---AAACG- -5'
6493 3' -47.7 NC_001847.1 + 54613 0.67 0.997721
Target:  5'- cCCGCGCCg---AUGCCgacg---UGCg -3'
miRNA:   3'- -GGCGCGGaauaUACGGagucaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 54664 0.68 0.995495
Target:  5'- -aGCGCUcgAUGgacaGCCUCGGgcggUGCa -3'
miRNA:   3'- ggCGCGGaaUAUa---CGGAGUCaaa-ACG- -5'
6493 3' -47.7 NC_001847.1 + 61864 0.73 0.934654
Target:  5'- gCCGCGCCUgccggcGCCcgCGGgggUUGCa -3'
miRNA:   3'- -GGCGCGGAauaua-CGGa-GUCaa-AACG- -5'
6493 3' -47.7 NC_001847.1 + 62461 0.72 0.949327
Target:  5'- uCUGCGCCgcgugGUGUGCCaCAGgc-UGCc -3'
miRNA:   3'- -GGCGCGGaa---UAUACGGaGUCaaaACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.