miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 3' -47.7 NC_001847.1 + 100504 0.7 0.985874
Target:  5'- gCGCGCCgc-UcgGCCUCGGcgcgcagGCg -3'
miRNA:   3'- gGCGCGGaauAuaCGGAGUCaaaa---CG- -5'
6493 3' -47.7 NC_001847.1 + 47555 0.7 0.987577
Target:  5'- aCgGCGCCg-----GCCUCGGUga-GCa -3'
miRNA:   3'- -GgCGCGGaauauaCGGAGUCAaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 100287 0.7 0.989116
Target:  5'- aCCGCGCCUgcacuUGCCUUug----GCa -3'
miRNA:   3'- -GGCGCGGAauau-ACGGAGucaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 40654 0.7 0.989116
Target:  5'- gCCGCGCCUcgcg-GCCUuCuGUacUUUGCc -3'
miRNA:   3'- -GGCGCGGAauauaCGGA-GuCA--AAACG- -5'
6493 3' -47.7 NC_001847.1 + 75140 0.69 0.990503
Target:  5'- cCCGCcgggGCCggcgGUGCuCUCGGUuagguUUUGCa -3'
miRNA:   3'- -GGCG----CGGaauaUACG-GAGUCA-----AAACG- -5'
6493 3' -47.7 NC_001847.1 + 124287 0.69 0.990503
Target:  5'- cCCGCGCCcgccgcGCCUCGGccacGCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 682 0.69 0.991747
Target:  5'- gCCGCGCC-UAUGccaucuugcccUGCCgcaAGUUUaUGCu -3'
miRNA:   3'- -GGCGCGGaAUAU-----------ACGGag-UCAAA-ACG- -5'
6493 3' -47.7 NC_001847.1 + 120341 0.69 0.993659
Target:  5'- gCCGCGCagcucc-GCCgcugCGGUUUUGUa -3'
miRNA:   3'- -GGCGCGgaauauaCGGa---GUCAAAACG- -5'
6493 3' -47.7 NC_001847.1 + 109088 0.68 0.994472
Target:  5'- gCGCGCCUUuugcuuuUGCCUauuugcgcggcauuUAGUUUUGg -3'
miRNA:   3'- gGCGCGGAAuau----ACGGA--------------GUCAAAACg -5'
6493 3' -47.7 NC_001847.1 + 6275 0.68 0.994472
Target:  5'- gCGCGCCUUuugcuuuUGCCUauuugcgcggcauuUAGUUUUGg -3'
miRNA:   3'- gGCGCGGAAuau----ACGGA--------------GUCAAAACg -5'
6493 3' -47.7 NC_001847.1 + 109174 0.68 0.994723
Target:  5'- gCCGCGCgCUUGUucccaagGCgUCGGggcgggUGCg -3'
miRNA:   3'- -GGCGCG-GAAUAua-----CGgAGUCaaa---ACG- -5'
6493 3' -47.7 NC_001847.1 + 54664 0.68 0.995495
Target:  5'- -aGCGCUcgAUGgacaGCCUCGGgcggUGCa -3'
miRNA:   3'- ggCGCGGaaUAUa---CGGAGUCaaa-ACG- -5'
6493 3' -47.7 NC_001847.1 + 75300 0.68 0.996172
Target:  5'- aCCGCGCCUggccgGUGCCcCGcgag-GCg -3'
miRNA:   3'- -GGCGCGGAaua--UACGGaGUcaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 37978 0.68 0.996172
Target:  5'- gCGCGCCgccc-UGCCUCA-UUaUGCu -3'
miRNA:   3'- gGCGCGGaauauACGGAGUcAAaACG- -5'
6493 3' -47.7 NC_001847.1 + 1181 0.68 0.996595
Target:  5'- cCCgGCGCCUUAUcucgcuauagcuccGUGCgCUCGGUguucuUUUaGCg -3'
miRNA:   3'- -GG-CGCGGAAUA--------------UACG-GAGUCA-----AAA-CG- -5'
6493 3' -47.7 NC_001847.1 + 4516 0.68 0.996764
Target:  5'- uCCGCGUCUUcg--GCCUCGGc---GCc -3'
miRNA:   3'- -GGCGCGGAAuauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 91515 0.68 0.996764
Target:  5'- cCCGCGCCcuguaAUGUGCUUgAGg---GCc -3'
miRNA:   3'- -GGCGCGGaa---UAUACGGAgUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 107329 0.68 0.996764
Target:  5'- uCCGCGUCUUcg--GCCUCGGc---GCc -3'
miRNA:   3'- -GGCGCGGAAuauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 87602 0.68 0.997277
Target:  5'- cCCGCGCCcgccGUGCUggAGUUUgacaGCg -3'
miRNA:   3'- -GGCGCGGaauaUACGGagUCAAAa---CG- -5'
6493 3' -47.7 NC_001847.1 + 133521 0.67 0.997721
Target:  5'- gCGCGCCgcgGUGcUGCCgCGGcgcagUGCg -3'
miRNA:   3'- gGCGCGGaa-UAU-ACGGaGUCaaa--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.