miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 3' -47.7 NC_001847.1 + 133521 0.67 0.997721
Target:  5'- gCGCGCCgcgGUGcUGCCgCGGcgcagUGCg -3'
miRNA:   3'- gGCGCGGaa-UAU-ACGGaGUCaaa--ACG- -5'
6493 3' -47.7 NC_001847.1 + 30708 0.67 0.997721
Target:  5'- gCGCGCCgcgGUGcUGCCgCGGcgcagUGCg -3'
miRNA:   3'- gGCGCGGaa-UAU-ACGGaGUCaaa--ACG- -5'
6493 3' -47.7 NC_001847.1 + 16660 0.67 0.998032
Target:  5'- cCCGCGCCUacaggcgcGCC-CGGgccUUGCg -3'
miRNA:   3'- -GGCGCGGAauaua---CGGaGUCaa-AACG- -5'
6493 3' -47.7 NC_001847.1 + 67198 0.67 0.998103
Target:  5'- gCCGCGgC-UGUGUGCCgUC-GUgcUGCg -3'
miRNA:   3'- -GGCGCgGaAUAUACGG-AGuCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 2194 0.67 0.998103
Target:  5'- gCCGCGCCgcga---CCUCGGggcgGCa -3'
miRNA:   3'- -GGCGCGGaauauacGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 7711 0.67 0.998103
Target:  5'- gCGCGCCUUGg--GCaUUCAGgcgcaggGCg -3'
miRNA:   3'- gGCGCGGAAUauaCG-GAGUCaaaa---CG- -5'
6493 3' -47.7 NC_001847.1 + 44708 0.67 0.998103
Target:  5'- aCCGCGCgCUUAUuuugGCCUacg---UGCa -3'
miRNA:   3'- -GGCGCG-GAAUAua--CGGAgucaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 88389 0.67 0.998103
Target:  5'- aCCGCGCC----AUGCC--GGUUUcGCa -3'
miRNA:   3'- -GGCGCGGaauaUACGGagUCAAAaCG- -5'
6493 3' -47.7 NC_001847.1 + 105007 0.67 0.998103
Target:  5'- gCCGCGCCgcga---CCUCGGggcgGCa -3'
miRNA:   3'- -GGCGCGGaauauacGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 79103 0.67 0.99843
Target:  5'- gCCGCGCC----GUGCCUguGgaagaagGCc -3'
miRNA:   3'- -GGCGCGGaauaUACGGAguCaaaa---CG- -5'
6493 3' -47.7 NC_001847.1 + 1426 0.67 0.998708
Target:  5'- cCCGCGCCccgccaggcacUAUuUGCgCUCGGg--UGCa -3'
miRNA:   3'- -GGCGCGGa----------AUAuACG-GAGUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 39756 0.67 0.998708
Target:  5'- cCCgGCGCCg-----GCCUCAGagccgGCg -3'
miRNA:   3'- -GG-CGCGGaauauaCGGAGUCaaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 53575 0.67 0.998807
Target:  5'- gCCGCGCUgggcgacguggAUGCCUU---UUUGCg -3'
miRNA:   3'- -GGCGCGGaaua-------UACGGAGucaAAACG- -5'
6493 3' -47.7 NC_001847.1 + 86680 0.67 0.998876
Target:  5'- gCCGCGCgCUUu--UGCCUCAccuucacgcccucgGUgcuggUGCu -3'
miRNA:   3'- -GGCGCG-GAAuauACGGAGU--------------CAaa---ACG- -5'
6493 3' -47.7 NC_001847.1 + 15844 0.67 0.998943
Target:  5'- uUCGCGCCUU---UGCcCUCGGcgUUcGCc -3'
miRNA:   3'- -GGCGCGGAAuauACG-GAGUCaaAA-CG- -5'
6493 3' -47.7 NC_001847.1 + 99158 0.67 0.998943
Target:  5'- gCGCGCCUUGUGgcgccaGCCggCGGga--GCc -3'
miRNA:   3'- gGCGCGGAAUAUa-----CGGa-GUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 100909 0.66 0.99914
Target:  5'- gCCGCGCCgcGUAcuggGCCUgCAGc---GCg -3'
miRNA:   3'- -GGCGCGGaaUAUa---CGGA-GUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 42153 0.66 0.99914
Target:  5'- cCCgGCGCCUggacguUGCCggCGGg--UGCu -3'
miRNA:   3'- -GG-CGCGGAauau--ACGGa-GUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 103857 0.66 0.99914
Target:  5'- cCCGCGCCc-----GCCuggUCGGUgaUGCg -3'
miRNA:   3'- -GGCGCGGaauauaCGG---AGUCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 32393 0.66 0.99914
Target:  5'- gUCGCGCCUUGcGUgggggguuucGCCUUGGg---GCa -3'
miRNA:   3'- -GGCGCGGAAUaUA----------CGGAGUCaaaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.