Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6493 | 3' | -47.7 | NC_001847.1 | + | 75300 | 0.68 | 0.996172 |
Target: 5'- aCCGCGCCUggccgGUGCCcCGcgag-GCg -3' miRNA: 3'- -GGCGCGGAaua--UACGGaGUcaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 37978 | 0.68 | 0.996172 |
Target: 5'- gCGCGCCgccc-UGCCUCA-UUaUGCu -3' miRNA: 3'- gGCGCGGaauauACGGAGUcAAaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 54664 | 0.68 | 0.995495 |
Target: 5'- -aGCGCUcgAUGgacaGCCUCGGgcggUGCa -3' miRNA: 3'- ggCGCGGaaUAUa---CGGAGUCaaa-ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 109174 | 0.68 | 0.994723 |
Target: 5'- gCCGCGCgCUUGUucccaagGCgUCGGggcgggUGCg -3' miRNA: 3'- -GGCGCG-GAAUAua-----CGgAGUCaaa---ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 6275 | 0.68 | 0.994472 |
Target: 5'- gCGCGCCUUuugcuuuUGCCUauuugcgcggcauuUAGUUUUGg -3' miRNA: 3'- gGCGCGGAAuau----ACGGA--------------GUCAAAACg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 109088 | 0.68 | 0.994472 |
Target: 5'- gCGCGCCUUuugcuuuUGCCUauuugcgcggcauuUAGUUUUGg -3' miRNA: 3'- gGCGCGGAAuau----ACGGA--------------GUCAAAACg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 120341 | 0.69 | 0.993659 |
Target: 5'- gCCGCGCagcucc-GCCgcugCGGUUUUGUa -3' miRNA: 3'- -GGCGCGgaauauaCGGa---GUCAAAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 682 | 0.69 | 0.991747 |
Target: 5'- gCCGCGCC-UAUGccaucuugcccUGCCgcaAGUUUaUGCu -3' miRNA: 3'- -GGCGCGGaAUAU-----------ACGGag-UCAAA-ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 75140 | 0.69 | 0.990503 |
Target: 5'- cCCGCcgggGCCggcgGUGCuCUCGGUuagguUUUGCa -3' miRNA: 3'- -GGCG----CGGaauaUACG-GAGUCA-----AAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 124287 | 0.69 | 0.990503 |
Target: 5'- cCCGCGCCcgccgcGCCUCGGccacGCg -3' miRNA: 3'- -GGCGCGGaauauaCGGAGUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 40654 | 0.7 | 0.989116 |
Target: 5'- gCCGCGCCUcgcg-GCCUuCuGUacUUUGCc -3' miRNA: 3'- -GGCGCGGAauauaCGGA-GuCA--AAACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 100287 | 0.7 | 0.989116 |
Target: 5'- aCCGCGCCUgcacuUGCCUUug----GCa -3' miRNA: 3'- -GGCGCGGAauau-ACGGAGucaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 47555 | 0.7 | 0.987577 |
Target: 5'- aCgGCGCCg-----GCCUCGGUga-GCa -3' miRNA: 3'- -GgCGCGGaauauaCGGAGUCAaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 100504 | 0.7 | 0.985874 |
Target: 5'- gCGCGCCgc-UcgGCCUCGGcgcgcagGCg -3' miRNA: 3'- gGCGCGGaauAuaCGGAGUCaaaa---CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 15667 | 0.7 | 0.981939 |
Target: 5'- aUG-GCCUUGUGUGCCUCcugcggguAGUacUGCg -3' miRNA: 3'- gGCgCGGAAUAUACGGAG--------UCAaaACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 97853 | 0.7 | 0.981939 |
Target: 5'- gCGCGCCUUAUAcaaUGCUcCAGUcgacGCc -3' miRNA: 3'- gGCGCGGAAUAU---ACGGaGUCAaaa-CG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 84078 | 0.71 | 0.979213 |
Target: 5'- cCCGCGCacgaac-GCCUCGGUggccUGCu -3' miRNA: 3'- -GGCGCGgaauauaCGGAGUCAaa--ACG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 2615 | 0.71 | 0.977233 |
Target: 5'- gCCGCGCCggagGUGCUUCGGc----- -3' miRNA: 3'- -GGCGCGGaauaUACGGAGUCaaaacg -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 47014 | 0.71 | 0.974568 |
Target: 5'- gCGCGCCUUGUG-GCUcaUCAGcag-GCg -3' miRNA: 3'- gGCGCGGAAUAUaCGG--AGUCaaaaCG- -5' |
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6493 | 3' | -47.7 | NC_001847.1 | + | 89288 | 0.71 | 0.972864 |
Target: 5'- gCGCGCCgcggccgagGCCUCGGccgUGCc -3' miRNA: 3'- gGCGCGGaauaua---CGGAGUCaaaACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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