miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 3' -47.7 NC_001847.1 + 86680 0.67 0.998876
Target:  5'- gCCGCGCgCUUu--UGCCUCAccuucacgcccucgGUgcuggUGCu -3'
miRNA:   3'- -GGCGCG-GAAuauACGGAGU--------------CAaa---ACG- -5'
6493 3' -47.7 NC_001847.1 + 85755 0.66 0.999555
Target:  5'- cCCGCGCCacccaggccgGUA-GUCUUAGUgccgGCg -3'
miRNA:   3'- -GGCGCGGaa--------UAUaCGGAGUCAaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 84078 0.71 0.979213
Target:  5'- cCCGCGCacgaac-GCCUCGGUggccUGCu -3'
miRNA:   3'- -GGCGCGgaauauaCGGAGUCAaa--ACG- -5'
6493 3' -47.7 NC_001847.1 + 79103 0.67 0.99843
Target:  5'- gCCGCGCC----GUGCCUguGgaagaagGCc -3'
miRNA:   3'- -GGCGCGGaauaUACGGAguCaaaa---CG- -5'
6493 3' -47.7 NC_001847.1 + 77167 0.66 0.999612
Target:  5'- aCCGCGCCgguccUGCCUCccgacgccGCg -3'
miRNA:   3'- -GGCGCGGaauauACGGAGucaaaa--CG- -5'
6493 3' -47.7 NC_001847.1 + 76795 0.72 0.960119
Target:  5'- cCCGCGCCUggccgcccucUGCUggCAGUUUgUGCa -3'
miRNA:   3'- -GGCGCGGAauau------ACGGa-GUCAAA-ACG- -5'
6493 3' -47.7 NC_001847.1 + 75300 0.68 0.996172
Target:  5'- aCCGCGCCUggccgGUGCCcCGcgag-GCg -3'
miRNA:   3'- -GGCGCGGAaua--UACGGaGUcaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 75140 0.69 0.990503
Target:  5'- cCCGCcgggGCCggcgGUGCuCUCGGUuagguUUUGCa -3'
miRNA:   3'- -GGCG----CGGaauaUACG-GAGUCA-----AAACG- -5'
6493 3' -47.7 NC_001847.1 + 74287 0.66 0.999647
Target:  5'- cUCGCGCUg-----GCCUCGGcgg-GCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 73546 0.66 0.999647
Target:  5'- aCCGCGCgUacUcgGCCUUugAGUgcgcggUGCu -3'
miRNA:   3'- -GGCGCGgAauAuaCGGAG--UCAaa----ACG- -5'
6493 3' -47.7 NC_001847.1 + 72085 0.66 0.999305
Target:  5'- cCCGCGCCUc----GCC-CAGcUUUUGg -3'
miRNA:   3'- -GGCGCGGAauauaCGGaGUC-AAAACg -5'
6493 3' -47.7 NC_001847.1 + 67198 0.67 0.998103
Target:  5'- gCCGCGgC-UGUGUGCCgUC-GUgcUGCg -3'
miRNA:   3'- -GGCGCgGaAUAUACGG-AGuCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 66228 0.66 0.999442
Target:  5'- gCCGCGCCgaa----CCUCAGcgcgGCg -3'
miRNA:   3'- -GGCGCGGaauauacGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 64689 0.66 0.999442
Target:  5'- cCCGCGCgUgucgcaGUGCgUCAGgcgcgGCa -3'
miRNA:   3'- -GGCGCGgAaua---UACGgAGUCaaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 62461 0.72 0.949327
Target:  5'- uCUGCGCCgcgugGUGUGCCaCAGgc-UGCc -3'
miRNA:   3'- -GGCGCGGaa---UAUACGGaGUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 61864 0.73 0.934654
Target:  5'- gCCGCGCCUgccggcGCCcgCGGgggUUGCa -3'
miRNA:   3'- -GGCGCGGAauaua-CGGa-GUCaa-AACG- -5'
6493 3' -47.7 NC_001847.1 + 54664 0.68 0.995495
Target:  5'- -aGCGCUcgAUGgacaGCCUCGGgcggUGCa -3'
miRNA:   3'- ggCGCGGaaUAUa---CGGAGUCaaa-ACG- -5'
6493 3' -47.7 NC_001847.1 + 54613 0.67 0.997721
Target:  5'- cCCGCGCCg---AUGCCgacg---UGCg -3'
miRNA:   3'- -GGCGCGGaauaUACGGagucaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 53661 0.74 0.897988
Target:  5'- gCCGUGUCUgGUGUGCUUCgAGgagcUUUGCg -3'
miRNA:   3'- -GGCGCGGAaUAUACGGAG-UCa---AAACG- -5'
6493 3' -47.7 NC_001847.1 + 53575 0.67 0.998807
Target:  5'- gCCGCGCUgggcgacguggAUGCCUU---UUUGCg -3'
miRNA:   3'- -GGCGCGGaaua-------UACGGAGucaAAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.