miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6493 3' -47.7 NC_001847.1 + 133521 0.67 0.997721
Target:  5'- gCGCGCCgcgGUGcUGCCgCGGcgcagUGCg -3'
miRNA:   3'- gGCGCGGaa-UAU-ACGGaGUCaaa--ACG- -5'
6493 3' -47.7 NC_001847.1 + 127723 0.66 0.999442
Target:  5'- aCUGCGCCUUGgcaaGCCgcCGGUgccgucUGCc -3'
miRNA:   3'- -GGCGCGGAAUaua-CGGa-GUCAaa----ACG- -5'
6493 3' -47.7 NC_001847.1 + 126499 0.73 0.934654
Target:  5'- gUCGCGCgCUUAUAUGUCUUugAGUaggGCg -3'
miRNA:   3'- -GGCGCG-GAAUAUACGGAG--UCAaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 124287 0.69 0.990503
Target:  5'- cCCGCGCCcgccgcGCCUCGGccacGCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 120341 0.69 0.993659
Target:  5'- gCCGCGCagcucc-GCCgcugCGGUUUUGUa -3'
miRNA:   3'- -GGCGCGgaauauaCGGa---GUCAAAACG- -5'
6493 3' -47.7 NC_001847.1 + 109174 0.68 0.994723
Target:  5'- gCCGCGCgCUUGUucccaagGCgUCGGggcgggUGCg -3'
miRNA:   3'- -GGCGCG-GAAUAua-----CGgAGUCaaa---ACG- -5'
6493 3' -47.7 NC_001847.1 + 109088 0.68 0.994472
Target:  5'- gCGCGCCUUuugcuuuUGCCUauuugcgcggcauuUAGUUUUGg -3'
miRNA:   3'- gGCGCGGAAuau----ACGGA--------------GUCAAAACg -5'
6493 3' -47.7 NC_001847.1 + 107329 0.68 0.996764
Target:  5'- uCCGCGUCUUcg--GCCUCGGc---GCc -3'
miRNA:   3'- -GGCGCGGAAuauaCGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 106053 0.66 0.999647
Target:  5'- cCCGCGCCgugcucGCCggcggCAGgg--GCg -3'
miRNA:   3'- -GGCGCGGaauauaCGGa----GUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 105007 0.67 0.998103
Target:  5'- gCCGCGCCgcga---CCUCGGggcgGCa -3'
miRNA:   3'- -GGCGCGGaauauacGGAGUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 103857 0.66 0.99914
Target:  5'- cCCGCGCCc-----GCCuggUCGGUgaUGCg -3'
miRNA:   3'- -GGCGCGGaauauaCGG---AGUCAaaACG- -5'
6493 3' -47.7 NC_001847.1 + 100909 0.66 0.99914
Target:  5'- gCCGCGCCgcGUAcuggGCCUgCAGc---GCg -3'
miRNA:   3'- -GGCGCGGaaUAUa---CGGA-GUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 100504 0.7 0.985874
Target:  5'- gCGCGCCgc-UcgGCCUCGGcgcgcagGCg -3'
miRNA:   3'- gGCGCGGaauAuaCGGAGUCaaaa---CG- -5'
6493 3' -47.7 NC_001847.1 + 100287 0.7 0.989116
Target:  5'- aCCGCGCCUgcacuUGCCUUug----GCa -3'
miRNA:   3'- -GGCGCGGAauau-ACGGAGucaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 99158 0.67 0.998943
Target:  5'- gCGCGCCUUGUGgcgccaGCCggCGGga--GCc -3'
miRNA:   3'- gGCGCGGAAUAUa-----CGGa-GUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 97853 0.7 0.981939
Target:  5'- gCGCGCCUUAUAcaaUGCUcCAGUcgacGCc -3'
miRNA:   3'- gGCGCGGAAUAU---ACGGaGUCAaaa-CG- -5'
6493 3' -47.7 NC_001847.1 + 91515 0.68 0.996764
Target:  5'- cCCGCGCCcuguaAUGUGCUUgAGg---GCc -3'
miRNA:   3'- -GGCGCGGaa---UAUACGGAgUCaaaaCG- -5'
6493 3' -47.7 NC_001847.1 + 89288 0.71 0.972864
Target:  5'- gCGCGCCgcggccgagGCCUCGGccgUGCc -3'
miRNA:   3'- gGCGCGGaauaua---CGGAGUCaaaACG- -5'
6493 3' -47.7 NC_001847.1 + 88389 0.67 0.998103
Target:  5'- aCCGCGCC----AUGCC--GGUUUcGCa -3'
miRNA:   3'- -GGCGCGGaauaUACGGagUCAAAaCG- -5'
6493 3' -47.7 NC_001847.1 + 87602 0.68 0.997277
Target:  5'- cCCGCGCCcgccGUGCUggAGUUUgacaGCg -3'
miRNA:   3'- -GGCGCGGaauaUACGGagUCAAAa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.