miRNA display CGI


Results 41 - 60 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 3' -56.5 NC_001847.1 + 102259 0.74 0.432316
Target:  5'- -cGCGGCGCgcacCG-UGCCCUccaGCGCCa -3'
miRNA:   3'- gaCGCCGCGaau-GCaACGGGG---UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 116405 0.74 0.441346
Target:  5'- -gGCGGCGCUcugg--GCCCCGgGCCg -3'
miRNA:   3'- gaCGCCGCGAaugcaaCGGGGUgUGG- -5'
6494 3' -56.5 NC_001847.1 + 86499 0.74 0.441346
Target:  5'- gCUGCGGgGgcgGCGgcGCCCCGcCGCCg -3'
miRNA:   3'- -GACGCCgCgaaUGCaaCGGGGU-GUGG- -5'
6494 3' -56.5 NC_001847.1 + 28972 0.74 0.450481
Target:  5'- cCUGCGGCGCgcgUACGc--CCCCAUgGCCu -3'
miRNA:   3'- -GACGCCGCGa--AUGCaacGGGGUG-UGG- -5'
6494 3' -56.5 NC_001847.1 + 31776 0.74 0.450481
Target:  5'- -cGCGGCGCUgGCGUccGCCgCCACGuuccCCg -3'
miRNA:   3'- gaCGCCGCGAaUGCAa-CGG-GGUGU----GG- -5'
6494 3' -56.5 NC_001847.1 + 13953 0.74 0.450481
Target:  5'- gCUGCGGCuGCggccCGUgggagcccGCCCCugGCCg -3'
miRNA:   3'- -GACGCCG-CGaau-GCAa-------CGGGGugUGG- -5'
6494 3' -56.5 NC_001847.1 + 131785 0.74 0.450481
Target:  5'- cCUGCGGCGCgcgUACGc--CCCCAUgGCCu -3'
miRNA:   3'- -GACGCCGCGa--AUGCaacGGGGUG-UGG- -5'
6494 3' -56.5 NC_001847.1 + 134589 0.74 0.450481
Target:  5'- -cGCGGCGCUgGCGUccGCCgCCACGuuccCCg -3'
miRNA:   3'- gaCGCCGCGAaUGCAa-CGG-GGUGU----GG- -5'
6494 3' -56.5 NC_001847.1 + 97111 0.73 0.459719
Target:  5'- -gGCGGCGCggcgGCGcgcGCCCacaGCACCc -3'
miRNA:   3'- gaCGCCGCGaa--UGCaa-CGGGg--UGUGG- -5'
6494 3' -56.5 NC_001847.1 + 74163 0.73 0.459719
Target:  5'- -gGCGGCGCcucucgGCGUggGgCCCAUGCCg -3'
miRNA:   3'- gaCGCCGCGaa----UGCAa-CgGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 30924 0.73 0.459719
Target:  5'- -cGCGGUGCc--CG-UGCCCCGCGCg -3'
miRNA:   3'- gaCGCCGCGaauGCaACGGGGUGUGg -5'
6494 3' -56.5 NC_001847.1 + 65924 0.73 0.469057
Target:  5'- -cGCGGCGUcgGCGUU-CCCCGCggacGCCc -3'
miRNA:   3'- gaCGCCGCGaaUGCAAcGGGGUG----UGG- -5'
6494 3' -56.5 NC_001847.1 + 54561 0.73 0.469057
Target:  5'- -gGCGGCGCggaggACGacgGCCCCGCggGCUg -3'
miRNA:   3'- gaCGCCGCGaa---UGCaa-CGGGGUG--UGG- -5'
6494 3' -56.5 NC_001847.1 + 33587 0.73 0.478491
Target:  5'- -cGCGGUGCcgACGacGUCCUGCGCCa -3'
miRNA:   3'- gaCGCCGCGaaUGCaaCGGGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 63205 0.73 0.479439
Target:  5'- gUGCGGCGCggcgccguuuacgcgUGCGcgcGCCgCGCGCCg -3'
miRNA:   3'- gACGCCGCGa--------------AUGCaa-CGGgGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 34123 0.73 0.488017
Target:  5'- cCUGCGGCGCcugccGCGgugGCCgCCGCGgCg -3'
miRNA:   3'- -GACGCCGCGaa---UGCaa-CGG-GGUGUgG- -5'
6494 3' -56.5 NC_001847.1 + 58720 0.73 0.497632
Target:  5'- -cGCGcGCGCUcccgccGCGgggUGCCCC-CGCCg -3'
miRNA:   3'- gaCGC-CGCGAa-----UGCa--ACGGGGuGUGG- -5'
6494 3' -56.5 NC_001847.1 + 131821 0.73 0.497632
Target:  5'- -gGcCGGCGCcgGCGgcagcgGCgCCCGCGCCg -3'
miRNA:   3'- gaC-GCCGCGaaUGCaa----CG-GGGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 58853 0.73 0.497632
Target:  5'- -cGCGGCGC-UGCGU--CCgCGCGCCa -3'
miRNA:   3'- gaCGCCGCGaAUGCAacGGgGUGUGG- -5'
6494 3' -56.5 NC_001847.1 + 72038 0.73 0.497632
Target:  5'- -cGCGGCgGCggccccgggGCGUacccgGUCCCGCACCa -3'
miRNA:   3'- gaCGCCG-CGaa-------UGCAa----CGGGGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.