miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6494 5' -58.2 NC_001847.1 + 28663 0.74 0.33301
Target:  5'- -aGAUggGGgacGCGGGGAAGCAGUaCGCGg -3'
miRNA:   3'- agUUGuuCC---CGCCCCUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 131476 0.74 0.33301
Target:  5'- -aGAUggGGgacGCGGGGAAGCAGUaCGCGg -3'
miRNA:   3'- agUUGuuCC---CGCCCCUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 50037 0.74 0.340615
Target:  5'- cCAGCccgcGGGGCGcGGuGGCGGCCGCGg -3'
miRNA:   3'- aGUUGu---UCCCGCcCCuUCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 73008 0.73 0.35541
Target:  5'- gCAGCGcGGGCGcGGAaccaggccgcggcAGCGGCCGCGg -3'
miRNA:   3'- aGUUGUuCCCGCcCCU-------------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 134232 0.73 0.356201
Target:  5'- cCGGCGccGGCGGGcGGcggccGGCGGCCGCGg -3'
miRNA:   3'- aGUUGUucCCGCCC-CU-----UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 31419 0.73 0.356201
Target:  5'- cCGGCGccGGCGGGcGGcggccGGCGGCCGCGg -3'
miRNA:   3'- aGUUGUucCCGCCC-CU-----UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 8615 0.73 0.364179
Target:  5'- gCAgcGCAAGccccGcCGGGGGAGCGGCCGCu -3'
miRNA:   3'- aGU--UGUUCc---C-GCCCCUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 73111 0.73 0.364179
Target:  5'- -aGGCccGGGUGGcGGAGGUAGCCGCc -3'
miRNA:   3'- agUUGuuCCCGCC-CCUUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 4852 0.73 0.37228
Target:  5'- gUCAaaacGCAGGGGaGGGGggGgGGCgGCGg -3'
miRNA:   3'- -AGU----UGUUCCCgCCCCuuCgUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 107665 0.73 0.37228
Target:  5'- gUCAaaacGCAGGGGaGGGGggGgGGCgGCGg -3'
miRNA:   3'- -AGU----UGUUCCCgCCCCuuCgUCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 89572 0.73 0.380504
Target:  5'- cCGGCGAGGGCGuGGAGcGCGacgccGCCGCGg -3'
miRNA:   3'- aGUUGUUCCCGCcCCUU-CGU-----CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 92967 0.73 0.380504
Target:  5'- aCGGCucGGGCGGGcGGGCGGCgUGCAg -3'
miRNA:   3'- aGUUGuuCCCGCCCcUUCGUCG-GCGU- -5'
6494 5' -58.2 NC_001847.1 + 47632 0.73 0.388847
Target:  5'- uUCGGCGGcGGCGGGcacgugcAAGCAGCCGCc -3'
miRNA:   3'- -AGUUGUUcCCGCCCc------UUCGUCGGCGu -5'
6494 5' -58.2 NC_001847.1 + 56383 0.73 0.388847
Target:  5'- cUCGGCGcucGGGuCGGGGAGGuCGGCCGg- -3'
miRNA:   3'- -AGUUGUu--CCC-GCCCCUUC-GUCGGCgu -5'
6494 5' -58.2 NC_001847.1 + 130210 0.73 0.388847
Target:  5'- gCGGCGcggAGGGCGcGGGAAGC-GCgGCGg -3'
miRNA:   3'- aGUUGU---UCCCGC-CCCUUCGuCGgCGU- -5'
6494 5' -58.2 NC_001847.1 + 134959 0.73 0.39731
Target:  5'- -gGGCGGGGGCGGGGGccccGGgGGCCaagacGCAg -3'
miRNA:   3'- agUUGUUCCCGCCCCU----UCgUCGG-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 74474 0.73 0.39731
Target:  5'- -gAGCGGGGGCuGGGcguguugaugcAGCAGCCGCGc -3'
miRNA:   3'- agUUGUUCCCGcCCCu----------UCGUCGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 32146 0.73 0.39731
Target:  5'- -gGGCGGGGGCGGGGGccccGGgGGCCaagacGCAg -3'
miRNA:   3'- agUUGUUCCCGCCCCU----UCgUCGG-----CGU- -5'
6494 5' -58.2 NC_001847.1 + 86491 0.72 0.405027
Target:  5'- aCGACGAGGcuGCGGGGGcggcGGCGccccgccGCCGCGg -3'
miRNA:   3'- aGUUGUUCC--CGCCCCU----UCGU-------CGGCGU- -5'
6494 5' -58.2 NC_001847.1 + 96351 0.72 0.40589
Target:  5'- gCGGCAAuGGCGGGGccGGCGGUgGCAa -3'
miRNA:   3'- aGUUGUUcCCGCCCCu-UCGUCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.