miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6496 3' -51.7 NC_001847.1 + 53939 0.66 0.979929
Target:  5'- -cGGCGGCucuGUGCgCGAGGcgGCcgCCu -3'
miRNA:   3'- caUCGCCGu--CAUGgGUUUCa-CGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 69269 0.66 0.977547
Target:  5'- cUGGCGGCGG---CCGcGG-GCUUCCu -3'
miRNA:   3'- cAUCGCCGUCaugGGUuUCaCGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 8293 0.66 0.977547
Target:  5'- -aAGCGGCAGggcucCCCGGGGggccagGCUgUCg -3'
miRNA:   3'- caUCGCCGUCau---GGGUUUCa-----CGAaGG- -5'
6496 3' -51.7 NC_001847.1 + 121762 0.67 0.954784
Target:  5'- --cGCGGCGc-GCCCGGAcGUGCgcgCCg -3'
miRNA:   3'- cauCGCCGUcaUGGGUUU-CACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 37322 0.67 0.958737
Target:  5'- uGUGGCGGCAcGcGCCCGAc--GCggCCa -3'
miRNA:   3'- -CAUCGCCGU-CaUGGGUUucaCGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 76932 0.67 0.965917
Target:  5'- -cGGCgGGCAGauccGCCCGGAGcgccUGCUggCCg -3'
miRNA:   3'- caUCG-CCGUCa---UGGGUUUC----ACGAa-GG- -5'
6496 3' -51.7 NC_001847.1 + 99818 0.67 0.965917
Target:  5'- -gAGCGGCcGgggGCCgCuuAGUGCUUUg -3'
miRNA:   3'- caUCGCCGuCa--UGG-GuuUCACGAAGg -5'
6496 3' -51.7 NC_001847.1 + 88876 0.67 0.969155
Target:  5'- --cGCGGCGGUACauaCAcGAGcGCUgggCCa -3'
miRNA:   3'- cauCGCCGUCAUGg--GU-UUCaCGAa--GG- -5'
6496 3' -51.7 NC_001847.1 + 46517 0.67 0.969155
Target:  5'- -cAGCGGCAGcGCUCGGGGgGCggCg -3'
miRNA:   3'- caUCGCCGUCaUGGGUUUCaCGaaGg -5'
6496 3' -51.7 NC_001847.1 + 92872 0.67 0.965917
Target:  5'- cGUGGCGccGCGcGaGCUCGAGGUGCUgcugCCc -3'
miRNA:   3'- -CAUCGC--CGU-CaUGGGUUUCACGAa---GG- -5'
6496 3' -51.7 NC_001847.1 + 92279 0.67 0.965917
Target:  5'- cGUGGC-GCGGUGCgCGgcuaggAAGUGCcggUCCa -3'
miRNA:   3'- -CAUCGcCGUCAUGgGU------UUCACGa--AGG- -5'
6496 3' -51.7 NC_001847.1 + 83075 0.67 0.962446
Target:  5'- cUGGCGGCgaaGGUGCCCGcccacaccuccGGGcggGCcUCCg -3'
miRNA:   3'- cAUCGCCG---UCAUGGGU-----------UUCa--CGaAGG- -5'
6496 3' -51.7 NC_001847.1 + 62531 0.67 0.962446
Target:  5'- -gGGCGGCAcGUGCC----GUGCggCCa -3'
miRNA:   3'- caUCGCCGU-CAUGGguuuCACGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 70800 0.67 0.958737
Target:  5'- --cGCGGCGGgGCCgGGAGgGgaUCCg -3'
miRNA:   3'- cauCGCCGUCaUGGgUUUCaCgaAGG- -5'
6496 3' -51.7 NC_001847.1 + 86369 0.67 0.965917
Target:  5'- --uGCGGCGGUGCCCGcGGauUGUggCg -3'
miRNA:   3'- cauCGCCGUCAUGGGUuUC--ACGaaGg -5'
6496 3' -51.7 NC_001847.1 + 119382 0.67 0.965917
Target:  5'- cGgcGCGGCucgcgGGUACaCCuuuggcgcGUGCUUCCc -3'
miRNA:   3'- -CauCGCCG-----UCAUG-GGuuu-----CACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 26028 0.67 0.965917
Target:  5'- aUGGCGGCA--GCaaAAGGUGCgggCCa -3'
miRNA:   3'- cAUCGCCGUcaUGggUUUCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 4761 0.67 0.969155
Target:  5'- aGUAGCGGCucaugGCCUcggcGAAGggGCgUUCCa -3'
miRNA:   3'- -CAUCGCCGuca--UGGG----UUUCa-CG-AAGG- -5'
6496 3' -51.7 NC_001847.1 + 11065 0.67 0.970387
Target:  5'- -cGGCGGCAGUucaccugccuguuccACCCc--GUGCUguucaaCCa -3'
miRNA:   3'- caUCGCCGUCA---------------UGGGuuuCACGAa-----GG- -5'
6496 3' -51.7 NC_001847.1 + 12462 0.67 0.954784
Target:  5'- --cGCGGCGGaGCCUccgcgGCUUCCc -3'
miRNA:   3'- cauCGCCGUCaUGGGuuucaCGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.