miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6496 3' -51.7 NC_001847.1 + 29273 0.69 0.901149
Target:  5'- cUGGCGGCGc-ACCCGGAGcGCgugcUCCg -3'
miRNA:   3'- cAUCGCCGUcaUGGGUUUCaCGa---AGG- -5'
6496 3' -51.7 NC_001847.1 + 132086 0.69 0.901149
Target:  5'- cUGGCGGCGc-ACCCGGAGcGCgugcUCCg -3'
miRNA:   3'- cAUCGCCGUcaUGGGUUUCaCGa---AGG- -5'
6496 3' -51.7 NC_001847.1 + 49072 0.69 0.90704
Target:  5'- -gGGCGGCGGcAgCCGAcaagccaacagacAGUGCgUCCg -3'
miRNA:   3'- caUCGCCGUCaUgGGUU-------------UCACGaAGG- -5'
6496 3' -51.7 NC_001847.1 + 106687 0.69 0.907682
Target:  5'- -cAGCGGCGGcgGCCCGucGcGCggcgCCg -3'
miRNA:   3'- caUCGCCGUCa-UGGGUuuCaCGaa--GG- -5'
6496 3' -51.7 NC_001847.1 + 3874 0.69 0.907682
Target:  5'- -cAGCGGCGGcgGCCCGucGcGCggcgCCg -3'
miRNA:   3'- caUCGCCGUCa-UGGGUuuCaCGaa--GG- -5'
6496 3' -51.7 NC_001847.1 + 106718 0.69 0.907682
Target:  5'- uUGGCGGC-GUGCgCCAGGGcGCUaagCCc -3'
miRNA:   3'- cAUCGCCGuCAUG-GGUUUCaCGAa--GG- -5'
6496 3' -51.7 NC_001847.1 + 78207 0.69 0.913957
Target:  5'- -cGGCGGCugcGGUGCaCCGucGUGUUcCCg -3'
miRNA:   3'- caUCGCCG---UCAUG-GGUuuCACGAaGG- -5'
6496 3' -51.7 NC_001847.1 + 18556 0.69 0.919972
Target:  5'- -gAGCGGCAGcgcugcGCCCAGAGcGCagaugCCc -3'
miRNA:   3'- caUCGCCGUCa-----UGGGUUUCaCGaa---GG- -5'
6496 3' -51.7 NC_001847.1 + 106262 0.69 0.919972
Target:  5'- --uGCGGCAGcGCCCAcAGcGCgUUCUg -3'
miRNA:   3'- cauCGCCGUCaUGGGUuUCaCG-AAGG- -5'
6496 3' -51.7 NC_001847.1 + 121614 0.69 0.919972
Target:  5'- -cGGCGGCGGUugCUGccGcUGCUgcugCCg -3'
miRNA:   3'- caUCGCCGUCAugGGUuuC-ACGAa---GG- -5'
6496 3' -51.7 NC_001847.1 + 3449 0.69 0.919972
Target:  5'- --uGCGGCAGcGCCCAcAGcGCgUUCUg -3'
miRNA:   3'- cauCGCCGUCaUGGGUuUCaCG-AAGG- -5'
6496 3' -51.7 NC_001847.1 + 47490 0.68 0.93068
Target:  5'- --uGCGGCGcaGCCCAAacagcgcAGUugGCUUCCa -3'
miRNA:   3'- cauCGCCGUcaUGGGUU-------UCA--CGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 82907 0.68 0.931218
Target:  5'- -cGGCGcGCGGcGCCCGGGG-GCUUUUu -3'
miRNA:   3'- caUCGC-CGUCaUGGGUUUCaCGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 121272 0.68 0.936448
Target:  5'- -cAGCGGCAGUGCCgCGuccgcuAGcagGCUguaCCg -3'
miRNA:   3'- caUCGCCGUCAUGG-GUu-----UCa--CGAa--GG- -5'
6496 3' -51.7 NC_001847.1 + 5934 0.68 0.941418
Target:  5'- -gGGCGGCGGacgacggGCCCGcccgcUGCUUCUa -3'
miRNA:   3'- caUCGCCGUCa------UGGGUuuc--ACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 108747 0.68 0.941418
Target:  5'- -gGGCGGCGGacgacggGCCCGcccgcUGCUUCUa -3'
miRNA:   3'- caUCGCCGUCa------UGGGUuuc--ACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 64227 0.68 0.945207
Target:  5'- -gGGCGGCGGcgcgaagcUGCCCG-AGUGCcgcgaguagcggUCCg -3'
miRNA:   3'- caUCGCCGUC--------AUGGGUuUCACGa-----------AGG- -5'
6496 3' -51.7 NC_001847.1 + 44702 0.68 0.946128
Target:  5'- -gAGCGGUAGagaGCCCAGGGUaGCgggaagggcgCCg -3'
miRNA:   3'- caUCGCCGUCa--UGGGUUUCA-CGaa--------GG- -5'
6496 3' -51.7 NC_001847.1 + 127073 0.68 0.950583
Target:  5'- --cGCGGCGGUGCCCcccucUGCgcgcgggCCg -3'
miRNA:   3'- cauCGCCGUCAUGGGuuuc-ACGaa-----GG- -5'
6496 3' -51.7 NC_001847.1 + 18738 0.68 0.950583
Target:  5'- --cGCGGCccGGgGCCCAGAGcGCcgCCg -3'
miRNA:   3'- cauCGCCG--UCaUGGGUUUCaCGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.