miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6496 3' -51.7 NC_001847.1 + 28097 0.72 0.775804
Target:  5'- -gGGCGGCGGUGCCCucGGgGCcaggaCCg -3'
miRNA:   3'- caUCGCCGUCAUGGGuuUCaCGaa---GG- -5'
6496 3' -51.7 NC_001847.1 + 29273 0.69 0.901149
Target:  5'- cUGGCGGCGc-ACCCGGAGcGCgugcUCCg -3'
miRNA:   3'- cAUCGCCGUcaUGGGUUUCaCGa---AGG- -5'
6496 3' -51.7 NC_001847.1 + 29887 0.74 0.69411
Target:  5'- --cGCGGCGGagugccugccGCCCGAAGUGCgcCCg -3'
miRNA:   3'- cauCGCCGUCa---------UGGGUUUCACGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 33558 0.69 0.901149
Target:  5'- -aGGCGGCAGacGCCgCGGAG-GCggCCg -3'
miRNA:   3'- caUCGCCGUCa-UGG-GUUUCaCGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 37322 0.67 0.958737
Target:  5'- uGUGGCGGCAcGcGCCCGAc--GCggCCa -3'
miRNA:   3'- -CAUCGCCGU-CaUGGGUUucaCGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 37661 0.7 0.856756
Target:  5'- --uGCGGCAGccGCCCAgcgAGGUGCagaCCg -3'
miRNA:   3'- cauCGCCGUCa-UGGGU---UUCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 38178 0.66 0.974962
Target:  5'- -aAGCGGCcGUACCCGcgaacgaaGAGcGCcugCCg -3'
miRNA:   3'- caUCGCCGuCAUGGGU--------UUCaCGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 38759 0.7 0.880038
Target:  5'- cGUGGCGGCGG-GCCC---GUGCUggagcacgagcgUCCc -3'
miRNA:   3'- -CAUCGCCGUCaUGGGuuuCACGA------------AGG- -5'
6496 3' -51.7 NC_001847.1 + 39822 0.73 0.715083
Target:  5'- --cGCGGCGG-GCCCG-AGcGCUUCCu -3'
miRNA:   3'- cauCGCCGUCaUGGGUuUCaCGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 43093 0.7 0.887323
Target:  5'- -cGGCGGCGGaggcGCCCGGAG-GCg-CCg -3'
miRNA:   3'- caUCGCCGUCa---UGGGUUUCaCGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 43911 0.66 0.982118
Target:  5'- -cGGCuGCAGgcggacCCCGAAGUGUuguucgcauuUUCCg -3'
miRNA:   3'- caUCGcCGUCau----GGGUUUCACG----------AAGG- -5'
6496 3' -51.7 NC_001847.1 + 44304 0.66 0.982118
Target:  5'- cGgcGCGGCGGgccaGCgCCAGagcGGUGCccgCCg -3'
miRNA:   3'- -CauCGCCGUCa---UG-GGUU---UCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 44702 0.68 0.946128
Target:  5'- -gAGCGGUAGagaGCCCAGGGUaGCgggaagggcgCCg -3'
miRNA:   3'- caUCGCCGUCa--UGGGUUUCA-CGaa--------GG- -5'
6496 3' -51.7 NC_001847.1 + 46517 0.67 0.969155
Target:  5'- -cAGCGGCAGcGCUCGGGGgGCggCg -3'
miRNA:   3'- caUCGCCGUCaUGGGUUUCaCGaaGg -5'
6496 3' -51.7 NC_001847.1 + 47490 0.68 0.93068
Target:  5'- --uGCGGCGcaGCCCAAacagcgcAGUugGCUUCCa -3'
miRNA:   3'- cauCGCCGUcaUGGGUU-------UCA--CGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 47598 0.71 0.840111
Target:  5'- aGUGGCGGUAGaUGCCCGcgaauaCUUCCa -3'
miRNA:   3'- -CAUCGCCGUC-AUGGGUuucac-GAAGG- -5'
6496 3' -51.7 NC_001847.1 + 47896 0.66 0.974146
Target:  5'- -aAGCGGCAGauCCCGcggcGGUgagcgcugcgcagcGCUUCCa -3'
miRNA:   3'- caUCGCCGUCauGGGUu---UCA--------------CGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 48006 0.67 0.969155
Target:  5'- -cAGCGuGCAGcGCUCAAagaGGUGCUUg- -3'
miRNA:   3'- caUCGC-CGUCaUGGGUU---UCACGAAgg -5'
6496 3' -51.7 NC_001847.1 + 49072 0.69 0.90704
Target:  5'- -gGGCGGCGGcAgCCGAcaagccaacagacAGUGCgUCCg -3'
miRNA:   3'- caUCGCCGUCaUgGGUU-------------UCACGaAGG- -5'
6496 3' -51.7 NC_001847.1 + 51319 0.66 0.981907
Target:  5'- --uGCGGCGGcgcuucauggaccUGCUCAAcGgcgGCUUCCu -3'
miRNA:   3'- cauCGCCGUC-------------AUGGGUUuCa--CGAAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.