miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6496 3' -51.7 NC_001847.1 + 3449 0.69 0.919972
Target:  5'- --uGCGGCAGcGCCCAcAGcGCgUUCUg -3'
miRNA:   3'- cauCGCCGUCaUGGGUuUCaCG-AAGG- -5'
6496 3' -51.7 NC_001847.1 + 3874 0.69 0.907682
Target:  5'- -cAGCGGCGGcgGCCCGucGcGCggcgCCg -3'
miRNA:   3'- caUCGCCGUCa-UGGGUuuCaCGaa--GG- -5'
6496 3' -51.7 NC_001847.1 + 4761 0.67 0.969155
Target:  5'- aGUAGCGGCucaugGCCUcggcGAAGggGCgUUCCa -3'
miRNA:   3'- -CAUCGCCGuca--UGGG----UUUCa-CG-AAGG- -5'
6496 3' -51.7 NC_001847.1 + 5934 0.68 0.941418
Target:  5'- -gGGCGGCGGacgacggGCCCGcccgcUGCUUCUa -3'
miRNA:   3'- caUCGCCGUCa------UGGGUuuc--ACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 6925 0.66 0.979929
Target:  5'- aUAGCccccugGCCCGcAGUGCUUCCg -3'
miRNA:   3'- cAUCGccgucaUGGGUuUCACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 8293 0.66 0.977547
Target:  5'- -aAGCGGCAGggcucCCCGGGGggccagGCUgUCg -3'
miRNA:   3'- caUCGCCGUCau---GGGUUUCa-----CGAaGG- -5'
6496 3' -51.7 NC_001847.1 + 11065 0.67 0.970387
Target:  5'- -cGGCGGCAGUucaccugccuguuccACCCc--GUGCUguucaaCCa -3'
miRNA:   3'- caUCGCCGUCA---------------UGGGuuuCACGAa-----GG- -5'
6496 3' -51.7 NC_001847.1 + 12462 0.67 0.954784
Target:  5'- --cGCGGCGGaGCCUccgcgGCUUCCc -3'
miRNA:   3'- cauCGCCGUCaUGGGuuucaCGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 13490 0.74 0.683533
Target:  5'- -cAGCGGCGGccuuCCgCGAAGUGCgcgCCa -3'
miRNA:   3'- caUCGCCGUCau--GG-GUUUCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 13940 0.66 0.979929
Target:  5'- --cGCGGCAGgggggccGCCCcgcgcAAGUGCcgCCc -3'
miRNA:   3'- cauCGCCGUCa------UGGGu----UUCACGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 14529 0.71 0.848541
Target:  5'- -cGGCGGCGcucgcUGCCCGcGGUGCcgCCg -3'
miRNA:   3'- caUCGCCGUc----AUGGGUuUCACGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 15979 1.12 0.003706
Target:  5'- gGUAGCGGCAGUACCCAAAGUGCUUCCu -3'
miRNA:   3'- -CAUCGCCGUCAUGGGUUUCACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 17909 0.66 0.979929
Target:  5'- -gGGCGaCGGcGgCCAAGGUGCcggUCCg -3'
miRNA:   3'- caUCGCcGUCaUgGGUUUCACGa--AGG- -5'
6496 3' -51.7 NC_001847.1 + 18556 0.69 0.919972
Target:  5'- -gAGCGGCAGcgcugcGCCCAGAGcGCagaugCCc -3'
miRNA:   3'- caUCGCCGUCa-----UGGGUUUCaCGaa---GG- -5'
6496 3' -51.7 NC_001847.1 + 18738 0.68 0.950583
Target:  5'- --cGCGGCccGGgGCCCAGAGcGCcgCCg -3'
miRNA:   3'- cauCGCCG--UCaUGGGUUUCaCGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 21954 0.7 0.872511
Target:  5'- --cGCGGCGGcACCgGGGGggGCUUUCg -3'
miRNA:   3'- cauCGCCGUCaUGGgUUUCa-CGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 23213 0.66 0.977297
Target:  5'- --uGCGGCAGguCCCuAGGUGCagucgaggcgcggUUCCu -3'
miRNA:   3'- cauCGCCGUCauGGGuUUCACG-------------AAGG- -5'
6496 3' -51.7 NC_001847.1 + 26028 0.67 0.965917
Target:  5'- aUGGCGGCA--GCaaAAGGUGCgggCCa -3'
miRNA:   3'- cAUCGCCGUcaUGggUUUCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 27164 0.74 0.69411
Target:  5'- --cGCGGCGGccaGCCCAAuaaugucggcggGGUGCUUCa -3'
miRNA:   3'- cauCGCCGUCa--UGGGUU------------UCACGAAGg -5'
6496 3' -51.7 NC_001847.1 + 27303 0.68 0.950583
Target:  5'- -aGGaCGGCGGUGCCgGcGG-GCgugUCCa -3'
miRNA:   3'- caUC-GCCGUCAUGGgUuUCaCGa--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.