miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6496 3' -51.7 NC_001847.1 + 132086 0.69 0.901149
Target:  5'- cUGGCGGCGc-ACCCGGAGcGCgugcUCCg -3'
miRNA:   3'- cAUCGCCGUcaUGGGUUUCaCGa---AGG- -5'
6496 3' -51.7 NC_001847.1 + 130910 0.72 0.775804
Target:  5'- -gGGCGGCGGUGCCCucGGgGCcaggaCCg -3'
miRNA:   3'- caUCGCCGUCAUGGGuuUCaCGaa---GG- -5'
6496 3' -51.7 NC_001847.1 + 128534 0.66 0.974962
Target:  5'- -cGGCGGCuuUACuCCAAcagcGGUGCgacUCCc -3'
miRNA:   3'- caUCGCCGucAUG-GGUU----UCACGa--AGG- -5'
6496 3' -51.7 NC_001847.1 + 127073 0.68 0.950583
Target:  5'- --cGCGGCGGUGCCCcccucUGCgcgcgggCCg -3'
miRNA:   3'- cauCGCCGUCAUGGGuuuc-ACGaa-----GG- -5'
6496 3' -51.7 NC_001847.1 + 126026 0.66 0.977297
Target:  5'- --uGCGGCAGguCCCuAGGUGCagucgaggcgcggUUCCu -3'
miRNA:   3'- cauCGCCGUCauGGGuUUCACG-------------AAGG- -5'
6496 3' -51.7 NC_001847.1 + 121762 0.67 0.954784
Target:  5'- --cGCGGCGc-GCCCGGAcGUGCgcgCCg -3'
miRNA:   3'- cauCGCCGUcaUGGGUUU-CACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 121614 0.69 0.919972
Target:  5'- -cGGCGGCGGUugCUGccGcUGCUgcugCCg -3'
miRNA:   3'- caUCGCCGUCAugGGUuuC-ACGAa---GG- -5'
6496 3' -51.7 NC_001847.1 + 121272 0.68 0.936448
Target:  5'- -cAGCGGCAGUGCCgCGuccgcuAGcagGCUguaCCg -3'
miRNA:   3'- caUCGCCGUCAUGG-GUu-----UCa--CGAa--GG- -5'
6496 3' -51.7 NC_001847.1 + 120233 0.66 0.972168
Target:  5'- --cGCGGC-GUACgCCAAaauuuccugcAGgcggGCUUCCg -3'
miRNA:   3'- cauCGCCGuCAUG-GGUU----------UCa---CGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 119382 0.67 0.965917
Target:  5'- cGgcGCGGCucgcgGGUACaCCuuuggcgcGUGCUUCCc -3'
miRNA:   3'- -CauCGCCG-----UCAUG-GGuuu-----CACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 114844 0.7 0.887323
Target:  5'- -gAGCuaGGCgAGUACUCAAucaUGCUUCCg -3'
miRNA:   3'- caUCG--CCG-UCAUGGGUUuc-ACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 111629 0.66 0.9797
Target:  5'- -gGGCGGCGaccucguGUGCUCuGGGUGCcaCCu -3'
miRNA:   3'- caUCGCCGU-------CAUGGGuUUCACGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 109738 0.66 0.979929
Target:  5'- aUAGCccccugGCCCGcAGUGCUUCCg -3'
miRNA:   3'- cAUCGccgucaUGGGUuUCACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 108747 0.68 0.941418
Target:  5'- -gGGCGGCGGacgacggGCCCGcccgcUGCUUCUa -3'
miRNA:   3'- caUCGCCGUCa------UGGGUuuc--ACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 106718 0.69 0.907682
Target:  5'- uUGGCGGC-GUGCgCCAGGGcGCUaagCCc -3'
miRNA:   3'- cAUCGCCGuCAUG-GGUUUCaCGAa--GG- -5'
6496 3' -51.7 NC_001847.1 + 106687 0.69 0.907682
Target:  5'- -cAGCGGCGGcgGCCCGucGcGCggcgCCg -3'
miRNA:   3'- caUCGCCGUCa-UGGGUuuCaCGaa--GG- -5'
6496 3' -51.7 NC_001847.1 + 106262 0.69 0.919972
Target:  5'- --uGCGGCAGcGCCCAcAGcGCgUUCUg -3'
miRNA:   3'- cauCGCCGUCaUGGGUuUCaCG-AAGG- -5'
6496 3' -51.7 NC_001847.1 + 99818 0.67 0.965917
Target:  5'- -gAGCGGCcGgggGCCgCuuAGUGCUUUg -3'
miRNA:   3'- caUCGCCGuCa--UGG-GuuUCACGAAGg -5'
6496 3' -51.7 NC_001847.1 + 92872 0.67 0.965917
Target:  5'- cGUGGCGccGCGcGaGCUCGAGGUGCUgcugCCc -3'
miRNA:   3'- -CAUCGC--CGU-CaUGGGUUUCACGAa---GG- -5'
6496 3' -51.7 NC_001847.1 + 92279 0.67 0.965917
Target:  5'- cGUGGC-GCGGUGCgCGgcuaggAAGUGCcggUCCa -3'
miRNA:   3'- -CAUCGcCGUCAUGgGU------UUCACGa--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.