miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6496 3' -51.7 NC_001847.1 + 59288 0.74 0.661183
Target:  5'- -cGGCGGCGggaaaccGUACCCAGGGUGCc--- -3'
miRNA:   3'- caUCGCCGU-------CAUGGGUUUCACGaagg -5'
6496 3' -51.7 NC_001847.1 + 108747 0.68 0.941418
Target:  5'- -gGGCGGCGGacgacggGCCCGcccgcUGCUUCUa -3'
miRNA:   3'- caUCGCCGUCa------UGGGUuuc--ACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 82907 0.68 0.931218
Target:  5'- -cGGCGcGCGGcGCCCGGGG-GCUUUUu -3'
miRNA:   3'- caUCGC-CGUCaUGGGUUUCaCGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 121614 0.69 0.919972
Target:  5'- -cGGCGGCGGUugCUGccGcUGCUgcugCCg -3'
miRNA:   3'- caUCGCCGUCAugGGUuuC-ACGAa---GG- -5'
6496 3' -51.7 NC_001847.1 + 106262 0.69 0.919972
Target:  5'- --uGCGGCAGcGCCCAcAGcGCgUUCUg -3'
miRNA:   3'- cauCGCCGUCaUGGGUuUCaCG-AAGG- -5'
6496 3' -51.7 NC_001847.1 + 18556 0.69 0.919972
Target:  5'- -gAGCGGCAGcgcugcGCCCAGAGcGCagaugCCc -3'
miRNA:   3'- caUCGCCGUCa-----UGGGUUUCaCGaa---GG- -5'
6496 3' -51.7 NC_001847.1 + 78207 0.69 0.913957
Target:  5'- -cGGCGGCugcGGUGCaCCGucGUGUUcCCg -3'
miRNA:   3'- caUCGCCG---UCAUG-GGUuuCACGAaGG- -5'
6496 3' -51.7 NC_001847.1 + 106687 0.69 0.907682
Target:  5'- -cAGCGGCGGcgGCCCGucGcGCggcgCCg -3'
miRNA:   3'- caUCGCCGUCa-UGGGUuuCaCGaa--GG- -5'
6496 3' -51.7 NC_001847.1 + 49072 0.69 0.90704
Target:  5'- -gGGCGGCGGcAgCCGAcaagccaacagacAGUGCgUCCg -3'
miRNA:   3'- caUCGCCGUCaUgGGUU-------------UCACGaAGG- -5'
6496 3' -51.7 NC_001847.1 + 132086 0.69 0.901149
Target:  5'- cUGGCGGCGc-ACCCGGAGcGCgugcUCCg -3'
miRNA:   3'- cAUCGCCGUcaUGGGUUUCaCGa---AGG- -5'
6496 3' -51.7 NC_001847.1 + 33558 0.69 0.901149
Target:  5'- -aGGCGGCAGacGCCgCGGAG-GCggCCg -3'
miRNA:   3'- caUCGCCGUCa-UGG-GUUUCaCGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 43093 0.7 0.887323
Target:  5'- -cGGCGGCGGaggcGCCCGGAG-GCg-CCg -3'
miRNA:   3'- caUCGCCGUCa---UGGGUUUCaCGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 37661 0.7 0.856756
Target:  5'- --uGCGGCAGccGCCCAgcgAGGUGCagaCCg -3'
miRNA:   3'- cauCGCCGUCa-UGGGU---UUCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 80920 0.71 0.831474
Target:  5'- -aAGCGGCcGUGgCCGccGUGCUggCCg -3'
miRNA:   3'- caUCGCCGuCAUgGGUuuCACGAa-GG- -5'
6496 3' -51.7 NC_001847.1 + 81481 0.72 0.785493
Target:  5'- cUGGCGGCAGUugagcgGCCCG-GGUGCccggUCUu -3'
miRNA:   3'- cAUCGCCGUCA------UGGGUuUCACGa---AGG- -5'
6496 3' -51.7 NC_001847.1 + 130910 0.72 0.775804
Target:  5'- -gGGCGGCGGUGCCCucGGgGCcaggaCCg -3'
miRNA:   3'- caUCGCCGUCAUGGGuuUCaCGaa---GG- -5'
6496 3' -51.7 NC_001847.1 + 29887 0.74 0.69411
Target:  5'- --cGCGGCGGagugccugccGCCCGAAGUGCgcCCg -3'
miRNA:   3'- cauCGCCGUCa---------UGGGUUUCACGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 27164 0.74 0.69411
Target:  5'- --cGCGGCGGccaGCCCAAuaaugucggcggGGUGCUUCa -3'
miRNA:   3'- cauCGCCGUCa--UGGGUU------------UCACGAAGg -5'
6496 3' -51.7 NC_001847.1 + 13490 0.74 0.683533
Target:  5'- -cAGCGGCGGccuuCCgCGAAGUGCgcgCCa -3'
miRNA:   3'- caUCGCCGUCau--GG-GUUUCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 71498 0.75 0.619441
Target:  5'- gGUGGCGGCGGUGCgC--GGUGcCUUUCg -3'
miRNA:   3'- -CAUCGCCGUCAUGgGuuUCAC-GAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.