Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6496 | 3' | -51.7 | NC_001847.1 | + | 44304 | 0.66 | 0.982118 |
Target: 5'- cGgcGCGGCGGgccaGCgCCAGagcGGUGCccgCCg -3' miRNA: 3'- -CauCGCCGUCa---UG-GGUU---UCACGaa-GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 83075 | 0.67 | 0.962446 |
Target: 5'- cUGGCGGCgaaGGUGCCCGcccacaccuccGGGcggGCcUCCg -3' miRNA: 3'- cAUCGCCG---UCAUGGGU-----------UUCa--CGaAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 70800 | 0.67 | 0.958737 |
Target: 5'- --cGCGGCGGgGCCgGGAGgGgaUCCg -3' miRNA: 3'- cauCGCCGUCaUGGgUUUCaCgaAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 15979 | 1.12 | 0.003706 |
Target: 5'- gGUAGCGGCAGUACCCAAAGUGCUUCCu -3' miRNA: 3'- -CAUCGCCGUCAUGGGUUUCACGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 6925 | 0.66 | 0.979929 |
Target: 5'- aUAGCccccugGCCCGcAGUGCUUCCg -3' miRNA: 3'- cAUCGccgucaUGGGUuUCACGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 111629 | 0.66 | 0.9797 |
Target: 5'- -gGGCGGCGaccucguGUGCUCuGGGUGCcaCCu -3' miRNA: 3'- caUCGCCGU-------CAUGGGuUUCACGaaGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 38178 | 0.66 | 0.974962 |
Target: 5'- -aAGCGGCcGUACCCGcgaacgaaGAGcGCcugCCg -3' miRNA: 3'- caUCGCCGuCAUGGGU--------UUCaCGaa-GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 128534 | 0.66 | 0.974962 |
Target: 5'- -cGGCGGCuuUACuCCAAcagcGGUGCgacUCCc -3' miRNA: 3'- caUCGCCGucAUG-GGUU----UCACGa--AGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 53900 | 0.66 | 0.972168 |
Target: 5'- -cAGCGGCAG-GCCCAGccugGCccgCCg -3' miRNA: 3'- caUCGCCGUCaUGGGUUuca-CGaa-GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 92279 | 0.67 | 0.965917 |
Target: 5'- cGUGGC-GCGGUGCgCGgcuaggAAGUGCcggUCCa -3' miRNA: 3'- -CAUCGcCGUCAUGgGU------UUCACGa--AGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 48006 | 0.67 | 0.969155 |
Target: 5'- -cAGCGuGCAGcGCUCAAagaGGUGCUUg- -3' miRNA: 3'- caUCGC-CGUCaUGGGUU---UCACGAAgg -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 120233 | 0.66 | 0.972168 |
Target: 5'- --cGCGGC-GUACgCCAAaauuuccugcAGgcggGCUUCCg -3' miRNA: 3'- cauCGCCGuCAUG-GGUU----------UCa---CGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 73118 | 0.66 | 0.982118 |
Target: 5'- gGUGGCGGaGGUAgCCGccGUGCUc-- -3' miRNA: 3'- -CAUCGCCgUCAUgGGUuuCACGAagg -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 46517 | 0.67 | 0.969155 |
Target: 5'- -cAGCGGCAGcGCUCGGGGgGCggCg -3' miRNA: 3'- caUCGCCGUCaUGGGUUUCaCGaaGg -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 17909 | 0.66 | 0.979929 |
Target: 5'- -gGGCGaCGGcGgCCAAGGUGCcggUCCg -3' miRNA: 3'- caUCGCcGUCaUgGGUUUCACGa--AGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 47896 | 0.66 | 0.974146 |
Target: 5'- -aAGCGGCAGauCCCGcggcGGUgagcgcugcgcagcGCUUCCa -3' miRNA: 3'- caUCGCCGUCauGGGUu---UCA--------------CGAAGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 92872 | 0.67 | 0.965917 |
Target: 5'- cGUGGCGccGCGcGaGCUCGAGGUGCUgcugCCc -3' miRNA: 3'- -CAUCGC--CGU-CaUGGGUUUCACGAa---GG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 62531 | 0.67 | 0.962446 |
Target: 5'- -gGGCGGCAcGUGCC----GUGCggCCa -3' miRNA: 3'- caUCGCCGU-CAUGGguuuCACGaaGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 13940 | 0.66 | 0.979929 |
Target: 5'- --cGCGGCAGgggggccGCCCcgcgcAAGUGCcgCCc -3' miRNA: 3'- cauCGCCGUCa------UGGGu----UUCACGaaGG- -5' |
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6496 | 3' | -51.7 | NC_001847.1 | + | 23213 | 0.66 | 0.977297 |
Target: 5'- --uGCGGCAGguCCCuAGGUGCagucgaggcgcggUUCCu -3' miRNA: 3'- cauCGCCGUCauGGGuUUCACG-------------AAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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