miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6496 3' -51.7 NC_001847.1 + 15979 1.12 0.003706
Target:  5'- gGUAGCGGCAGUACCCAAAGUGCUUCCu -3'
miRNA:   3'- -CAUCGCCGUCAUGGGUUUCACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 71498 0.75 0.619441
Target:  5'- gGUGGCGGCGGUGCgC--GGUGcCUUUCg -3'
miRNA:   3'- -CAUCGCCGUCAUGgGuuUCAC-GAAGG- -5'
6496 3' -51.7 NC_001847.1 + 59288 0.74 0.661183
Target:  5'- -cGGCGGCGggaaaccGUACCCAGGGUGCc--- -3'
miRNA:   3'- caUCGCCGU-------CAUGGGUUUCACGaagg -5'
6496 3' -51.7 NC_001847.1 + 13490 0.74 0.683533
Target:  5'- -cAGCGGCGGccuuCCgCGAAGUGCgcgCCa -3'
miRNA:   3'- caUCGCCGUCau--GG-GUUUCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 27164 0.74 0.69411
Target:  5'- --cGCGGCGGccaGCCCAAuaaugucggcggGGUGCUUCa -3'
miRNA:   3'- cauCGCCGUCa--UGGGUU------------UCACGAAGg -5'
6496 3' -51.7 NC_001847.1 + 29887 0.74 0.69411
Target:  5'- --cGCGGCGGagugccugccGCCCGAAGUGCgcCCg -3'
miRNA:   3'- cauCGCCGUCa---------UGGGUUUCACGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 39822 0.73 0.715083
Target:  5'- --cGCGGCGG-GCCCG-AGcGCUUCCu -3'
miRNA:   3'- cauCGCCGUCaUGGGUuUCaCGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 28097 0.72 0.775804
Target:  5'- -gGGCGGCGGUGCCCucGGgGCcaggaCCg -3'
miRNA:   3'- caUCGCCGUCAUGGGuuUCaCGaa---GG- -5'
6496 3' -51.7 NC_001847.1 + 130910 0.72 0.775804
Target:  5'- -gGGCGGCGGUGCCCucGGgGCcaggaCCg -3'
miRNA:   3'- caUCGCCGUCAUGGGuuUCaCGaa---GG- -5'
6496 3' -51.7 NC_001847.1 + 81481 0.72 0.785493
Target:  5'- cUGGCGGCAGUugagcgGCCCG-GGUGCccggUCUu -3'
miRNA:   3'- cAUCGCCGUCA------UGGGUuUCACGa---AGG- -5'
6496 3' -51.7 NC_001847.1 + 80920 0.71 0.831474
Target:  5'- -aAGCGGCcGUGgCCGccGUGCUggCCg -3'
miRNA:   3'- caUCGCCGuCAUgGGUuuCACGAa-GG- -5'
6496 3' -51.7 NC_001847.1 + 47598 0.71 0.840111
Target:  5'- aGUGGCGGUAGaUGCCCGcgaauaCUUCCa -3'
miRNA:   3'- -CAUCGCCGUC-AUGGGUuucac-GAAGG- -5'
6496 3' -51.7 NC_001847.1 + 14529 0.71 0.848541
Target:  5'- -cGGCGGCGcucgcUGCCCGcGGUGCcgCCg -3'
miRNA:   3'- caUCGCCGUc----AUGGGUuUCACGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 37661 0.7 0.856756
Target:  5'- --uGCGGCAGccGCCCAgcgAGGUGCagaCCg -3'
miRNA:   3'- cauCGCCGUCa-UGGGU---UUCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 21954 0.7 0.872511
Target:  5'- --cGCGGCGGcACCgGGGGggGCUUUCg -3'
miRNA:   3'- cauCGCCGUCaUGGgUUUCa-CGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 38759 0.7 0.880038
Target:  5'- cGUGGCGGCGG-GCCC---GUGCUggagcacgagcgUCCc -3'
miRNA:   3'- -CAUCGCCGUCaUGGGuuuCACGA------------AGG- -5'
6496 3' -51.7 NC_001847.1 + 78854 0.7 0.887323
Target:  5'- aGUAGCuGguGUGCUCGcGGUGCgcgCCc -3'
miRNA:   3'- -CAUCGcCguCAUGGGUuUCACGaa-GG- -5'
6496 3' -51.7 NC_001847.1 + 114844 0.7 0.887323
Target:  5'- -gAGCuaGGCgAGUACUCAAucaUGCUUCCg -3'
miRNA:   3'- caUCG--CCG-UCAUGGGUUuc-ACGAAGG- -5'
6496 3' -51.7 NC_001847.1 + 43093 0.7 0.887323
Target:  5'- -cGGCGGCGGaggcGCCCGGAG-GCg-CCg -3'
miRNA:   3'- caUCGCCGUCa---UGGGUUUCaCGaaGG- -5'
6496 3' -51.7 NC_001847.1 + 132086 0.69 0.901149
Target:  5'- cUGGCGGCGc-ACCCGGAGcGCgugcUCCg -3'
miRNA:   3'- cAUCGCCGUcaUGGGUUUCaCGa---AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.