miRNA display CGI


Results 21 - 40 of 361 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 71474 0.66 0.944023
Target:  5'- gGGCAUGGCGGccgcgagcaugAGCAGaUCuUCCGCGu -3'
miRNA:   3'- gUCGUAUUGCU-----------UCGUC-AGcGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 1919 0.66 0.944023
Target:  5'- gGGCAggUGGCGAGGCuuAGcCGgCgCGCGGc -3'
miRNA:   3'- gUCGU--AUUGCUUCG--UCaGCgG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 7146 0.66 0.944023
Target:  5'- gCAGCAUcAGCGAAaacccgaucgcGCAGcCGUCgGUGGc -3'
miRNA:   3'- -GUCGUA-UUGCUU-----------CGUCaGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 105669 0.66 0.944023
Target:  5'- gAGCGUGccgccucggccGCG-GGCGGcgcuUCGgCCGCGGg -3'
miRNA:   3'- gUCGUAU-----------UGCuUCGUC----AGCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 57937 0.66 0.939341
Target:  5'- gCGGCcaAACuGGAGCAG--GCCCGCGa -3'
miRNA:   3'- -GUCGuaUUG-CUUCGUCagCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 60123 0.66 0.939341
Target:  5'- gCGGCGUGAgCGAGGgGGcgucggCGCCgaagaaCGCGGg -3'
miRNA:   3'- -GUCGUAUU-GCUUCgUCa-----GCGG------GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 19792 0.66 0.939341
Target:  5'- uCAGCAUcgucGGCgGAGGCGGUgGCggUgGCGGg -3'
miRNA:   3'- -GUCGUA----UUG-CUUCGUCAgCG--GgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 102746 0.66 0.939341
Target:  5'- aCGGCc-GACGggGC-GUCGUgCCGCGu -3'
miRNA:   3'- -GUCGuaUUGCuuCGuCAGCG-GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 48407 0.66 0.939341
Target:  5'- gCGGCAaAGCGGGacGC-GUCGCCgGCGc -3'
miRNA:   3'- -GUCGUaUUGCUU--CGuCAGCGGgCGCc -5'
6497 3' -54.3 NC_001847.1 + 131926 0.66 0.939341
Target:  5'- gCGGCGgcGCgGAGGCAcGUgCGCCgGCGa -3'
miRNA:   3'- -GUCGUauUG-CUUCGU-CA-GCGGgCGCc -5'
6497 3' -54.3 NC_001847.1 + 42711 0.66 0.939341
Target:  5'- cCAGCccggauuUGGCGcGGCGGgcgGCCgCGCGGg -3'
miRNA:   3'- -GUCGu------AUUGCuUCGUCag-CGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 52797 0.66 0.939341
Target:  5'- gCGGCGacaugGGCGggGCuauaGGUCGCUCGUc- -3'
miRNA:   3'- -GUCGUa----UUGCuuCG----UCAGCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 31222 0.66 0.939341
Target:  5'- gCGGCGUGggcgcGCGaAAGCGGggcgCGCCCGg-- -3'
miRNA:   3'- -GUCGUAU-----UGC-UUCGUCa---GCGGGCgcc -5'
6497 3' -54.3 NC_001847.1 + 91461 0.66 0.939341
Target:  5'- gAGCGUccacACGAGGUcGUCGagcaCCUGCGGc -3'
miRNA:   3'- gUCGUAu---UGCUUCGuCAGC----GGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 52917 0.66 0.939341
Target:  5'- nGGCA--GCGGcuCGGggCGCCCGCGa -3'
miRNA:   3'- gUCGUauUGCUucGUCa-GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 93061 0.66 0.939341
Target:  5'- cCGGCAccGCGAGGCcGaugCGCCgcaGCGGc -3'
miRNA:   3'- -GUCGUauUGCUUCGuCa--GCGGg--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 10743 0.66 0.939341
Target:  5'- cCGGCGUAcagGCGcauuuucuGGCAGagcugCGCgCGCGGg -3'
miRNA:   3'- -GUCGUAU---UGCu-------UCGUCa----GCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 33469 0.66 0.938859
Target:  5'- gAGCAUGGCucgcuucGAGGCGa-UGUCCGCGGc -3'
miRNA:   3'- gUCGUAUUG-------CUUCGUcaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 59811 0.66 0.938375
Target:  5'- aCGGCGgu-CGAgAGCAGcguuugcgccagCGCCuCGCGGg -3'
miRNA:   3'- -GUCGUauuGCU-UCGUCa-----------GCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 127916 0.66 0.936414
Target:  5'- gAGCA-AGCGAgcgcagagagaagagAGCGGgcggCGgCCGCGGc -3'
miRNA:   3'- gUCGUaUUGCU---------------UCGUCa---GCgGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.