Results 41 - 60 of 777 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 77578 | 0.75 | 0.657351 |
Target: 5'- gCCGCGCGG--GCCGAGcuCGCACgGCGGc -3' miRNA: 3'- -GGCGCGUCuuUGGUUCu-GUGUG-CGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 99937 | 0.75 | 0.657351 |
Target: 5'- gCGCGCAGGGcGCCcAGcCGCGCGCGc -3' miRNA: 3'- gGCGCGUCUU-UGGuUCuGUGUGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 119269 | 0.75 | 0.625931 |
Target: 5'- cCCGCGCGGcucgucgaGGGCCAGuaccGACGCGCGCu- -3' miRNA: 3'- -GGCGCGUC--------UUUGGUU----CUGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 33545 | 0.75 | 0.604995 |
Target: 5'- aCGCGgAGGuugagUCGAGGCGCACGCGGg -3' miRNA: 3'- gGCGCgUCUuu---GGUUCUGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 68978 | 0.75 | 0.646887 |
Target: 5'- cCCGCGCGGGcacGGCCGAGA-GCACGUc- -3' miRNA: 3'- -GGCGCGUCU---UUGGUUCUgUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 35294 | 0.75 | 0.636411 |
Target: 5'- aCUGCGCAGccccGCCGAGcgGCGCGCGCu- -3' miRNA: 3'- -GGCGCGUCuu--UGGUUC--UGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 101077 | 0.75 | 0.657351 |
Target: 5'- gCCGcCGCGGggGCCGggucggcggggcGGGCGgGCGCGu -3' miRNA: 3'- -GGC-GCGUCuuUGGU------------UCUGUgUGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 3907 | 0.75 | 0.657351 |
Target: 5'- gCGCGCGGugGCgcGGACGCACGCa- -3' miRNA: 3'- gGCGCGUCuuUGguUCUGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 34641 | 0.75 | 0.657351 |
Target: 5'- gCGCGCcGAGGCCGAGcgGCGCGC-CGAg -3' miRNA: 3'- gGCGCGuCUUUGGUUC--UGUGUGcGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 49286 | 0.75 | 0.657351 |
Target: 5'- gCCGCGCGG-AGCCGcGACucgcuGCugGCGGu -3' miRNA: 3'- -GGCGCGUCuUUGGUuCUG-----UGugCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 70449 | 0.75 | 0.657351 |
Target: 5'- gCCGCGCcuGAcgcACUgcGACACGCGCGGg -3' miRNA: 3'- -GGCGCGu-CUu--UGGuuCUGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 99467 | 0.75 | 0.646887 |
Target: 5'- gCGCGCcgcucGggGCCAAGAUcaGCGCGAu -3' miRNA: 3'- gGCGCGu----CuuUGGUUCUGugUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 60851 | 0.75 | 0.646887 |
Target: 5'- gCUGCGCGGc-GCCAGGGCGuccaGCGCGGg -3' miRNA: 3'- -GGCGCGUCuuUGGUUCUGUg---UGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 72990 | 0.75 | 0.615457 |
Target: 5'- cCCGCGCGGGAgcugGCCGcaGCGCggGCGCGGa -3' miRNA: 3'- -GGCGCGUCUU----UGGUucUGUG--UGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 73932 | 0.75 | 0.615457 |
Target: 5'- aCCGCGCAGccggcgcguACCu-GGCGCGCGCGc -3' miRNA: 3'- -GGCGCGUCuu-------UGGuuCUGUGUGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 38602 | 0.75 | 0.604995 |
Target: 5'- gCGCGCGGcuGCaCAGccGGCGCGCGCGGu -3' miRNA: 3'- gGCGCGUCuuUG-GUU--CUGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 106601 | 0.75 | 0.636411 |
Target: 5'- cCCGCGCc---GCCGAaGCGCACGCGGc -3' miRNA: 3'- -GGCGCGucuuUGGUUcUGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 9494 | 0.75 | 0.604995 |
Target: 5'- aCCGCGCcGGugGACCAGGGCgACAuUGCGAg -3' miRNA: 3'- -GGCGCGuCU--UUGGUUCUG-UGU-GCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 53350 | 0.75 | 0.604995 |
Target: 5'- uCCGCGUAGGccACCAGGuccgcguCAUACGCGGg -3' miRNA: 3'- -GGCGCGUCUu-UGGUUCu------GUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 133978 | 0.75 | 0.636411 |
Target: 5'- -gGCGCcGggGCUggGAgCGCGCGCGGc -3' miRNA: 3'- ggCGCGuCuuUGGuuCU-GUGUGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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