miRNA display CGI


Results 61 - 80 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 101077 0.75 0.657351
Target:  5'- gCCGcCGCGGggGCCGggucggcggggcGGGCGgGCGCGu -3'
miRNA:   3'- -GGC-GCGUCuuUGGU------------UCUGUgUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 70449 0.75 0.657351
Target:  5'- gCCGCGCcuGAcgcACUgcGACACGCGCGGg -3'
miRNA:   3'- -GGCGCGu-CUu--UGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 49286 0.75 0.657351
Target:  5'- gCCGCGCGG-AGCCGcGACucgcuGCugGCGGu -3'
miRNA:   3'- -GGCGCGUCuUUGGUuCUG-----UGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 3907 0.75 0.657351
Target:  5'- gCGCGCGGugGCgcGGACGCACGCa- -3'
miRNA:   3'- gGCGCGUCuuUGguUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 34641 0.75 0.657351
Target:  5'- gCGCGCcGAGGCCGAGcgGCGCGC-CGAg -3'
miRNA:   3'- gGCGCGuCUUUGGUUC--UGUGUGcGCU- -5'
6500 3' -52.4 NC_001847.1 + 71953 0.74 0.667794
Target:  5'- gCGCGCGGGcucGGCCAuGGCGCGCgaccGCGAc -3'
miRNA:   3'- gGCGCGUCU---UUGGUuCUGUGUG----CGCU- -5'
6500 3' -52.4 NC_001847.1 + 98283 0.74 0.667794
Target:  5'- cCCGCGUAGAGcucggccgccGCCGAG-CGCACGUc- -3'
miRNA:   3'- -GGCGCGUCUU----------UGGUUCuGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 33632 0.74 0.667794
Target:  5'- -gGCGCGGcggcuGACCGcgAGGCGCGCGCGc -3'
miRNA:   3'- ggCGCGUCu----UUGGU--UCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 32992 0.74 0.667794
Target:  5'- gCGgGCAGGgcggccggagcGGCCGGGGgGCGCGCGGg -3'
miRNA:   3'- gGCgCGUCU-----------UUGGUUCUgUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 57581 0.74 0.676126
Target:  5'- cCCGCGCggccgcGGAAagcgcacgagggugcGCCAcgcccucgcgcucgcAGGCACGCGCGAg -3'
miRNA:   3'- -GGCGCG------UCUU---------------UGGU---------------UCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 77106 0.74 0.677167
Target:  5'- gCGCGCGGuAGCggcggggcugcuuCAAGGCGCGCGCGc -3'
miRNA:   3'- gGCGCGUCuUUG-------------GUUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 33675 0.74 0.678206
Target:  5'- cCCGCGCGGGGcuaGAGGCGCAgGCGc -3'
miRNA:   3'- -GGCGCGUCUUuggUUCUGUGUgCGCu -5'
6500 3' -52.4 NC_001847.1 + 72671 0.74 0.678206
Target:  5'- aCCGUGCGGcAGCCuguGGCACaccACGCGGc -3'
miRNA:   3'- -GGCGCGUCuUUGGuu-CUGUG---UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36760 0.74 0.678206
Target:  5'- cCUGCGCcuGGAGAUCGAGcGCGCcCGCGAc -3'
miRNA:   3'- -GGCGCG--UCUUUGGUUC-UGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 34675 0.74 0.678206
Target:  5'- gCCGCGCAGcgGCaggagGAGcGCugGCGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGg----UUC-UGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 130847 0.74 0.678206
Target:  5'- gCGCGC-GAGuACCAAGGCGCcgGCGCGc -3'
miRNA:   3'- gGCGCGuCUU-UGGUUCUGUG--UGCGCu -5'
6500 3' -52.4 NC_001847.1 + 56957 0.74 0.678206
Target:  5'- gCCGCG-AGAAGCCu--ACGCACGCGu -3'
miRNA:   3'- -GGCGCgUCUUUGGuucUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 82879 0.74 0.688579
Target:  5'- cCCGUGCGGGcgcgccgcAGCCAAGccGCGgCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCU--------UUGGUUC--UGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36418 0.74 0.69478
Target:  5'- gCGCGCAGAcccugcgacgcgcGCCGuagcGGCGCGCGCGGc -3'
miRNA:   3'- gGCGCGUCUu------------UGGUu---CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 68275 0.74 0.697872
Target:  5'- cCCGCGCGcgagcGGGACCGAGcuGCACAgcaucuuCGCGAu -3'
miRNA:   3'- -GGCGCGU-----CUUUGGUUC--UGUGU-------GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.