Results 41 - 60 of 777 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 29373 | 0.79 | 0.417604 |
Target: 5'- aCCGCGCGGcgGCCgGAGcugcCGCGCGCGAg -3' miRNA: 3'- -GGCGCGUCuuUGG-UUCu---GUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 74399 | 0.79 | 0.399903 |
Target: 5'- aCCGCGCGGccGCCGc-GCGCGCGCGGg -3' miRNA: 3'- -GGCGCGUCuuUGGUucUGUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 35959 | 0.8 | 0.391234 |
Target: 5'- cUCGCGCgAGGAccacgagggcGCCAAGGCGCGCGCa- -3' miRNA: 3'- -GGCGCG-UCUU----------UGGUUCUGUGUGCGcu -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 32839 | 0.81 | 0.341862 |
Target: 5'- cCCGCGUGGccGCCGAGACcgcggcgcucGCGCGCGAg -3' miRNA: 3'- -GGCGCGUCuuUGGUUCUG----------UGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 104330 | 0.81 | 0.318919 |
Target: 5'- gCGCGUAGGcGGCCucGGCGCGCGCGAa -3' miRNA: 3'- gGCGCGUCU-UUGGuuCUGUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 118247 | 0.77 | 0.522675 |
Target: 5'- cCCGCGC-GAGACCGGcGACGCA-GCGGu -3' miRNA: 3'- -GGCGCGuCUUUGGUU-CUGUGUgCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 108029 | 0.77 | 0.532768 |
Target: 5'- cUCGcCGCGGcgGCCGgcgGGGCGCGCGCGGc -3' miRNA: 3'- -GGC-GCGUCuuUGGU---UCUGUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 49286 | 0.75 | 0.657351 |
Target: 5'- gCCGCGCGG-AGCCGcGACucgcuGCugGCGGu -3' miRNA: 3'- -GGCGCGUCuUUGGUuCUG-----UGugCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 34641 | 0.75 | 0.657351 |
Target: 5'- gCGCGCcGAGGCCGAGcgGCGCGC-CGAg -3' miRNA: 3'- gGCGCGuCUUUGGUUC--UGUGUGcGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 3907 | 0.75 | 0.657351 |
Target: 5'- gCGCGCGGugGCgcGGACGCACGCa- -3' miRNA: 3'- gGCGCGUCuuUGguUCUGUGUGCGcu -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 101077 | 0.75 | 0.657351 |
Target: 5'- gCCGcCGCGGggGCCGggucggcggggcGGGCGgGCGCGu -3' miRNA: 3'- -GGC-GCGUCuuUGGU------------UCUGUgUGCGCu -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 35225 | 0.75 | 0.646887 |
Target: 5'- gCGCGCGGAcgugcugcaggcGGCCGgcGGGCGCGCgGCGGa -3' miRNA: 3'- gGCGCGUCU------------UUGGU--UCUGUGUG-CGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 99467 | 0.75 | 0.646887 |
Target: 5'- gCGCGCcgcucGggGCCAAGAUcaGCGCGAu -3' miRNA: 3'- gGCGCGu----CuuUGGUUCUGugUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 60851 | 0.75 | 0.646887 |
Target: 5'- gCUGCGCGGc-GCCAGGGCGuccaGCGCGGg -3' miRNA: 3'- -GGCGCGUCuuUGGUUCUGUg---UGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 106601 | 0.75 | 0.636411 |
Target: 5'- cCCGCGCc---GCCGAaGCGCACGCGGc -3' miRNA: 3'- -GGCGCGucuuUGGUUcUGUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 35294 | 0.75 | 0.636411 |
Target: 5'- aCUGCGCAGccccGCCGAGcgGCGCGCGCu- -3' miRNA: 3'- -GGCGCGUCuu--UGGUUC--UGUGUGCGcu -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 119269 | 0.75 | 0.625931 |
Target: 5'- cCCGCGCGGcucgucgaGGGCCAGuaccGACGCGCGCu- -3' miRNA: 3'- -GGCGCGUC--------UUUGGUU----CUGUGUGCGcu -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 32211 | 0.75 | 0.615457 |
Target: 5'- aCCGCgGCcuuGGAcGCCGuccAGGCGCACGCGGc -3' miRNA: 3'- -GGCG-CG---UCUuUGGU---UCUGUGUGCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 112307 | 0.75 | 0.604995 |
Target: 5'- aCCGCGCcGGugGACCAGGGCgACAuUGCGAg -3' miRNA: 3'- -GGCGCGuCU--UUGGUUCUG-UGU-GCGCU- -5' |
|||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 125234 | 0.76 | 0.563436 |
Target: 5'- uCCGCggggGCGGGGcCCGAGAC-CACGCGGu -3' miRNA: 3'- -GGCG----CGUCUUuGGUUCUGuGUGCGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home