miRNA display CGI


Results 41 - 60 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 116295 0.66 0.978926
Target:  5'- gCGUGCcccgcuGACCcgugcGGCGCGCGCGAg -3'
miRNA:   3'- gGCGCGucu---UUGGuu---CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 126888 0.66 0.982599
Target:  5'- gUCaCGCAGGAACCGcucguugcugccgcAGGCcaGCGCGUGGc -3'
miRNA:   3'- -GGcGCGUCUUUGGU--------------UCUG--UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 118760 0.66 0.983193
Target:  5'- aCGCGCGGuu-----GugGCGCGCGGu -3'
miRNA:   3'- gGCGCGUCuuugguuCugUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 131923 0.66 0.978926
Target:  5'- gCCGCgGCGGc-GCgGAGGCACGUGCGc -3'
miRNA:   3'- -GGCG-CGUCuuUGgUUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 875 0.66 0.983193
Target:  5'- aCGCGCGGcGgcggcccgcGCCGGGGcCGC-CGCGGc -3'
miRNA:   3'- gGCGCGUCuU---------UGGUUCU-GUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 116920 0.66 0.973903
Target:  5'- cCCGCGCgcacgaccgccgAGAGACCGccagcccgAGACcucgcCGCGCGu -3'
miRNA:   3'- -GGCGCG------------UCUUUGGU--------UCUGu----GUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 68743 0.66 0.983193
Target:  5'- cCCGCGCcgcGGAugU---GCGCGCGUGAu -3'
miRNA:   3'- -GGCGCGu--CUUugGuucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 69291 0.66 0.975751
Target:  5'- gCCGCGCAGGAAggcgucguagagguCCGAcAC-CACGCc- -3'
miRNA:   3'- -GGCGCGUCUUU--------------GGUUcUGuGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 54184 0.66 0.976513
Target:  5'- gCGCGCAGAAAgUCGccGCGCAaaaaGCGGc -3'
miRNA:   3'- gGCGCGUCUUU-GGUucUGUGUg---CGCU- -5'
6500 3' -52.4 NC_001847.1 + 107642 0.66 0.976513
Target:  5'- gCCGCgGCGGcgGCCGAGGCcucuGC-CGcCGAa -3'
miRNA:   3'- -GGCG-CGUCuuUGGUUCUG----UGuGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 32037 0.66 0.978926
Target:  5'- -gGCGCGGGGAC---GGCGCccGCGCGGg -3'
miRNA:   3'- ggCGCGUCUUUGguuCUGUG--UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36671 0.66 0.978926
Target:  5'- gCGUGCuGGAACCcgagcuGGCcaugcccuACACGCGAc -3'
miRNA:   3'- gGCGCGuCUUUGGuu----CUG--------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 110228 0.66 0.978926
Target:  5'- aCGUGCGGGccguGCUAA-ACAUGCGCGGc -3'
miRNA:   3'- gGCGCGUCUu---UGGUUcUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 42890 0.66 0.980502
Target:  5'- uCCGCGCcaAGAGcgcgagcugcagcgGCuCGAGAgCGCGCGCu- -3'
miRNA:   3'- -GGCGCG--UCUU--------------UG-GUUCU-GUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 50583 0.66 0.98115
Target:  5'- aCGaCGaGGAGGCCGuguacgAGGCGCACGCc- -3'
miRNA:   3'- gGC-GCgUCUUUGGU------UCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 64340 0.66 0.98115
Target:  5'- cCCGCGU---GGCCuGGuACACGCGCu- -3'
miRNA:   3'- -GGCGCGucuUUGGuUC-UGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 3910 0.66 0.981988
Target:  5'- gCCaGCGCGGgcGCCGGuugcgcgcccgcgcuGGCGC-CGCGGc -3'
miRNA:   3'- -GG-CGCGUCuuUGGUU---------------CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 46945 0.66 0.982997
Target:  5'- gCCGCGUgcggcgaagccaAGGAGCCGgccccacuuugggAGGCGCAgGCu- -3'
miRNA:   3'- -GGCGCG------------UCUUUGGU-------------UCUGUGUgCGcu -5'
6500 3' -52.4 NC_001847.1 + 40949 0.66 0.983193
Target:  5'- gCGCGCAGc-GCCucGAacugccCGCGCGAg -3'
miRNA:   3'- gGCGCGUCuuUGGuuCUgu----GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14004 0.66 0.983193
Target:  5'- aCGCGCcGAGAgCAcGGCAgCAgGCGGc -3'
miRNA:   3'- gGCGCGuCUUUgGUuCUGU-GUgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.