miRNA display CGI


Results 61 - 80 of 533 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 89930 0.73 0.665873
Target:  5'- gGCCGCGCucGCGGCGgcg---CU-CGCg -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 104738 0.73 0.665873
Target:  5'- cGCCGCgGCGCGGCGgccacUCgggcCGCc -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaAGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 30922 0.73 0.665873
Target:  5'- cGCCgGCgGUGCGGCGgaggc-CUUCGCa -3'
miRNA:   3'- aCGG-CG-CGCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 79988 0.73 0.665873
Target:  5'- aGCCGCuGCGCGGCGgugacgCccCGCg -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 1925 0.73 0.665873
Target:  5'- cGCCGCgGCGCGGCGgccacUCgggcCGCc -3'
miRNA:   3'- aCGGCG-CGCGCCGCaaauaAGaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 125068 0.73 0.665873
Target:  5'- -cCCGCGCGCGGCGgggcg-CUgggcccgCGCg -3'
miRNA:   3'- acGGCGCGCGCCGCaaauaaGAa------GCG- -5'
6500 5' -53.3 NC_001847.1 + 82905 0.73 0.666917
Target:  5'- cGCgGCGCGCGGCGcccgggggcuuuUUCU-CGCu -3'
miRNA:   3'- aCGgCGCGCGCCGCaaau--------AAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 40181 0.73 0.666917
Target:  5'- gGCUGCGCGCGGCGgaacggc--CGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 43721 0.73 0.674217
Target:  5'- cGCUGCGCGCGGaCGUggugg---CGCa -3'
miRNA:   3'- aCGGCGCGCGCC-GCAaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 120085 0.73 0.675258
Target:  5'- aGCCGCGCGgGGCGggagauaaagCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 75523 0.73 0.676299
Target:  5'- gGUCGCGgGCGGCGUcugcaUUGcgcUUCccgUCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCA-----AAU---AAGa--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 2945 0.73 0.686687
Target:  5'- gGCCGCcuccaGCGCGGCGgccgccUCggCGCg -3'
miRNA:   3'- aCGGCG-----CGCGCCGCaaaua-AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 120780 0.73 0.686687
Target:  5'- cGaCCGCGCGCuGGCGgc-GUUCccCGCa -3'
miRNA:   3'- aC-GGCGCGCG-CCGCaaaUAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 91596 0.73 0.686687
Target:  5'- cGCgGCGCucGCGGCGgcgcUUCUccUCGCg -3'
miRNA:   3'- aCGgCGCG--CGCCGCaaauAAGA--AGCG- -5'
6500 5' -53.3 NC_001847.1 + 5675 0.73 0.686687
Target:  5'- cGUCGCGCGCGGCGg-----CggcCGCc -3'
miRNA:   3'- aCGGCGCGCGCCGCaaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 130231 0.73 0.686687
Target:  5'- uUGCCGCcgGCGCGGuCGgug--UCgUUCGCa -3'
miRNA:   3'- -ACGGCG--CGCGCC-GCaaauaAG-AAGCG- -5'
6500 5' -53.3 NC_001847.1 + 27418 0.73 0.686687
Target:  5'- uUGCCGCcgGCGCGGuCGgug--UCgUUCGCa -3'
miRNA:   3'- -ACGGCG--CGCGCC-GCaaauaAG-AAGCG- -5'
6500 5' -53.3 NC_001847.1 + 102984 0.72 0.697028
Target:  5'- cGCCGCGCacgccgucGCGGCGUgcg--CgggCGCg -3'
miRNA:   3'- aCGGCGCG--------CGCCGCAaauaaGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 31154 0.72 0.707312
Target:  5'- gGCCGCG-GCGGUGgcc-UUCUgCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauAAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 98708 0.72 0.707312
Target:  5'- cGCCGCGCGCGccgcuacggcgcGCGUcgcagggUCUgcgCGCg -3'
miRNA:   3'- aCGGCGCGCGC------------CGCAaaua---AGAa--GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.