miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 3' -55.9 NC_001847.1 + 101947 0.66 0.893045
Target:  5'- cGUAGUCCgucauggccgCGAGCU--CGCG-GGCCGUc -3'
miRNA:   3'- -CAUCAGG----------GUUCGAagGUGCaCCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 101067 0.66 0.893045
Target:  5'- -cGGcCCCgGGGCcgCCGCGggGGCCGg -3'
miRNA:   3'- caUCaGGG-UUCGaaGGUGCa-CCGGCa -5'
6502 3' -55.9 NC_001847.1 + 17244 0.66 0.893045
Target:  5'- --cGUgCCGAGCcUCCACGggguaGCCGUu -3'
miRNA:   3'- cauCAgGGUUCGaAGGUGCac---CGGCA- -5'
6502 3' -55.9 NC_001847.1 + 56870 0.66 0.893045
Target:  5'- -cGG-CCCGGGCgcggCCACG-GGCCc- -3'
miRNA:   3'- caUCaGGGUUCGaa--GGUGCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 83023 0.66 0.892368
Target:  5'- -gAGgCCCAGcacuaccGCgggCCGCGUGGCCa- -3'
miRNA:   3'- caUCaGGGUU-------CGaa-GGUGCACCGGca -5'
6502 3' -55.9 NC_001847.1 + 70894 0.66 0.88617
Target:  5'- aUAGUCCCcuaGGGC--CCGcCGUGGCCu- -3'
miRNA:   3'- cAUCAGGG---UUCGaaGGU-GCACCGGca -5'
6502 3' -55.9 NC_001847.1 + 47943 0.66 0.879064
Target:  5'- cGUuGUCCagcaaaAAGCgcgucgucacgUCCACGUGGCCc- -3'
miRNA:   3'- -CAuCAGGg-----UUCGa----------AGGUGCACCGGca -5'
6502 3' -55.9 NC_001847.1 + 84361 0.66 0.87834
Target:  5'- aUGGUCCCGaagacgccgagcgGGC-UCCGCGuUGGCgCGc -3'
miRNA:   3'- cAUCAGGGU-------------UCGaAGGUGC-ACCG-GCa -5'
6502 3' -55.9 NC_001847.1 + 108526 0.66 0.87173
Target:  5'- -gAGggCUUucGCgcCCACGUGGCCGUc -3'
miRNA:   3'- caUCa-GGGuuCGaaGGUGCACCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 59200 0.66 0.864175
Target:  5'- cGUAG-CCCGAGCcgUCCGC---GCCGUg -3'
miRNA:   3'- -CAUCaGGGUUCGa-AGGUGcacCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 48021 0.66 0.856404
Target:  5'- gGUAGccCCCGAGCcg-CGCGcUGGCCGa -3'
miRNA:   3'- -CAUCa-GGGUUCGaagGUGC-ACCGGCa -5'
6502 3' -55.9 NC_001847.1 + 84684 0.67 0.840241
Target:  5'- --uGUCgCGcGGCgcUCACGUGGCCGUa -3'
miRNA:   3'- cauCAGgGU-UCGaaGGUGCACCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 39828 0.67 0.831863
Target:  5'- -gGG-CCCGAGCgcuUCCuGCGUGGCgCGc -3'
miRNA:   3'- caUCaGGGUUCGa--AGG-UGCACCG-GCa -5'
6502 3' -55.9 NC_001847.1 + 89261 0.67 0.831863
Target:  5'- -aGGUCCUcGGCUUUCugG-GGCCc- -3'
miRNA:   3'- caUCAGGGuUCGAAGGugCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 32273 0.67 0.823298
Target:  5'- cGUGG-CUCGcGCcgUCCGCGUGGCgCGg -3'
miRNA:   3'- -CAUCaGGGUuCGa-AGGUGCACCG-GCa -5'
6502 3' -55.9 NC_001847.1 + 59143 0.67 0.814553
Target:  5'- gGUGGUCCCAguuguaccGGCg-CCGCuUGGCCa- -3'
miRNA:   3'- -CAUCAGGGU--------UCGaaGGUGcACCGGca -5'
6502 3' -55.9 NC_001847.1 + 111062 0.67 0.814553
Target:  5'- cGUGGUCCuCucGCUgCCGCG-GGCCu- -3'
miRNA:   3'- -CAUCAGG-GuuCGAaGGUGCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 105891 0.67 0.805637
Target:  5'- cGUAGUCCguGcGCggCCGCGgGGCCa- -3'
miRNA:   3'- -CAUCAGGguU-CGaaGGUGCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 112111 0.67 0.805637
Target:  5'- cUGG-CUCGAGCgg-CGCGUGGCCGc -3'
miRNA:   3'- cAUCaGGGUUCGaagGUGCACCGGCa -5'
6502 3' -55.9 NC_001847.1 + 52104 0.68 0.787328
Target:  5'- -cGG-CCCAAGCgcacuagcggCCGCG-GGCCGg -3'
miRNA:   3'- caUCaGGGUUCGaa--------GGUGCaCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.