miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 122215 0.68 0.270299
Target:  5'- gCCGGGGcCGGGuGcccucAGGGGCGCCCa- -3'
miRNA:   3'- -GGCCCCcGCCCcCc----UCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 121401 0.67 0.31444
Target:  5'- aCCGGGGGCaGGagcugcguggaGGGcGGAGCcguugagcgGCCCg- -3'
miRNA:   3'- -GGCCCCCGcCC-----------CCCuCCUCG---------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 121363 0.68 0.236553
Target:  5'- gCGGcGGGCGGGGuGGGGAGCGg---- -3'
miRNA:   3'- gGCC-CCCGCCCCcCUCCUCGCgggau -5'
6507 3' -68.6 NC_001847.1 + 119651 0.66 0.356448
Target:  5'- aCGGGGcagcCGGGcGGGAGGgcaacGGCgGCCCc- -3'
miRNA:   3'- gGCCCCc---GCCC-CCCUCC-----UCG-CGGGau -5'
6507 3' -68.6 NC_001847.1 + 119226 0.69 0.226115
Target:  5'- aCCGcGGGGCGGcGGGGcAGGcauGGgGCCg-- -3'
miRNA:   3'- -GGC-CCCCGCC-CCCC-UCC---UCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 119106 0.68 0.241922
Target:  5'- gCCGcGGGGCGGcGGGGcAGGcauGGgGCCg-- -3'
miRNA:   3'- -GGC-CCCCGCC-CCCC-UCC---UCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 115927 0.66 0.334263
Target:  5'- -gGGGGGCugccgucGGGaacgagcaGGGAGGGGuCGCCgCUGg -3'
miRNA:   3'- ggCCCCCG-------CCC--------CCCUCCUC-GCGG-GAU- -5'
6507 3' -68.6 NC_001847.1 + 115554 0.69 0.201722
Target:  5'- cCCGgaucGGGGCGGGGaGGGGGGCGaaacuCCUUAa -3'
miRNA:   3'- -GGC----CCCCGCCCCcCUCCUCGC-----GGGAU- -5'
6507 3' -68.6 NC_001847.1 + 114930 0.72 0.141849
Target:  5'- aCGGGGGCucgcguuuGGcGGGGcGGGGCGCCg-- -3'
miRNA:   3'- gGCCCCCG--------CC-CCCCuCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 114053 0.7 0.175498
Target:  5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3'
miRNA:   3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 113684 0.72 0.132012
Target:  5'- cCCGcGGGGCGGGaGGGggaaggGGGAGCcggagcuuugGCCCg- -3'
miRNA:   3'- -GGC-CCCCGCCC-CCC------UCCUCG----------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 111794 0.72 0.138497
Target:  5'- cCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 111432 1.06 0.00032
Target:  5'- gCCGGGGGCGGGGGGAGGAGCGCCCUAc -3'
miRNA:   3'- -GGCCCCCGCCCCCCUCCUCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 111288 0.75 0.07904
Target:  5'- gCCGGGGGCGGcgcucggccGGGGGcGGGGC-CCCUu -3'
miRNA:   3'- -GGCCCCCGCC---------CCCCU-CCUCGcGGGAu -5'
6507 3' -68.6 NC_001847.1 + 110440 0.67 0.282379
Target:  5'- -gGGuGGGUGGGGGGGuGGAGgGaCCa- -3'
miRNA:   3'- ggCC-CCCGCCCCCCU-CCUCgCgGGau -5'
6507 3' -68.6 NC_001847.1 + 110237 0.79 0.044458
Target:  5'- -gGGGGGgGGGGGGGGGGGCguacuugcagcgGCCCg- -3'
miRNA:   3'- ggCCCCCgCCCCCCUCCUCG------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 109653 0.73 0.11119
Target:  5'- gCGGGGaGuUGGGGGGGGGGGCggcgcuugcuuugGCCCg- -3'
miRNA:   3'- gGCCCC-C-GCCCCCCUCCUCG-------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 108098 0.66 0.342018
Target:  5'- cCCGGGGaCGGGGGuacGGcGAGCGCgacggcgaggguCCUGg -3'
miRNA:   3'- -GGCCCCcGCCCCCc--UC-CUCGCG------------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 106795 0.67 0.312441
Target:  5'- gCCGGGGGCccGGgcgcgcggccccgcGGGGcgccGGGcccGGCGCCCg- -3'
miRNA:   3'- -GGCCCCCG--CC--------------CCCC----UCC---UCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 105585 0.66 0.327326
Target:  5'- gCCGGcacGGCGuccgugcGGGGGAacucGAGCGCCCg- -3'
miRNA:   3'- -GGCCc--CCGC-------CCCCCUc---CUCGCGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.