Results 21 - 40 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 128722 | 0.71 | 0.159742 |
Target: 5'- gCGGGGuGCGaGGGGGAGGGGguggugGCCgUGg -3' miRNA: 3'- gGCCCC-CGC-CCCCCUCCUCg-----CGGgAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 84538 | 0.71 | 0.156008 |
Target: 5'- uUGGcGGGCGGGGcGGGGcGuGCGCCUc- -3' miRNA: 3'- gGCC-CCCGCCCC-CCUC-CuCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 75009 | 0.74 | 0.091654 |
Target: 5'- gCCGGcGGGCGGGGGGccagcGGGcagaaGGCGCCg-- -3' miRNA: 3'- -GGCC-CCCGCCCCCC-----UCC-----UCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 111288 | 0.75 | 0.07904 |
Target: 5'- gCCGGGGGCGGcgcucggccGGGGGcGGGGC-CCCUu -3' miRNA: 3'- -GGCCCCCGCC---------CCCCU-CCUCGcGGGAu -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 84466 | 0.75 | 0.07904 |
Target: 5'- gUGGGGaGCGGGGGGGGGGGCGg---- -3' miRNA: 3'- gGCCCC-CGCCCCCCUCCUCGCgggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 71 | 0.76 | 0.06642 |
Target: 5'- gCGGGGGCGGGGuGGGGGAuggGCGCg--- -3' miRNA: 3'- gGCCCCCGCCCC-CCUCCU---CGCGggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 102683 | 0.77 | 0.054373 |
Target: 5'- -gGGGGGCGGGGcGGGGGcagGGCGCCg-- -3' miRNA: 3'- ggCCCCCGCCCC-CCUCC---UCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 110237 | 0.79 | 0.044458 |
Target: 5'- -gGGGGGgGGGGGGGGGGGCguacuugcagcgGCCCg- -3' miRNA: 3'- ggCCCCCgCCCCCCUCCUCG------------CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 134948 | 0.82 | 0.022978 |
Target: 5'- gCCGGGGGCGGGGGcGGGGGCggggGCCCc- -3' miRNA: 3'- -GGCCCCCGCCCCCcUCCUCG----CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 134514 | 0.83 | 0.018732 |
Target: 5'- cUCGGGGGCGGGGGGAGGcgcgggccgcGCGCCgCUGc -3' miRNA: 3'- -GGCCCCCGCCCCCCUCCu---------CGCGG-GAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 54518 | 0.74 | 0.096268 |
Target: 5'- -gGGGGGCGGuGGGGcGGGGcCGUCCg- -3' miRNA: 3'- ggCCCCCGCC-CCCCuCCUC-GCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 130893 | 0.73 | 0.106162 |
Target: 5'- gCGGGgacugaGGCGGGGGGcGGcGGUGCCCUc -3' miRNA: 3'- gGCCC------CCGCCCCCCuCC-UCGCGGGAu -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 76405 | 0.72 | 0.145274 |
Target: 5'- gCCGGGGGCcgcggcGGGGGcaccccgcggcGGGAGCGCgCg- -3' miRNA: 3'- -GGCCCCCGc-----CCCCC-----------UCCUCGCGgGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 114930 | 0.72 | 0.141849 |
Target: 5'- aCGGGGGCucgcguuuGGcGGGGcGGGGCGCCg-- -3' miRNA: 3'- gGCCCCCG--------CC-CCCCuCCUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 132731 | 0.72 | 0.139829 |
Target: 5'- gCGGGGGCcccucGGGGGAGGAcgacucugggccgagGCGCCg-- -3' miRNA: 3'- gGCCCCCGc----CCCCCUCCU---------------CGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 111794 | 0.72 | 0.138497 |
Target: 5'- cCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3' miRNA: 3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 113684 | 0.72 | 0.132012 |
Target: 5'- cCCGcGGGGCGGGaGGGggaaggGGGAGCcggagcuuugGCCCg- -3' miRNA: 3'- -GGC-CCCCGCCC-CCC------UCCUCG----------CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 32076 | 0.72 | 0.125504 |
Target: 5'- gCGGGGGCcggggaagauuGGGGGGAGGGgggaaacgcggcuGCGgCCCg- -3' miRNA: 3'- gGCCCCCG-----------CCCCCCUCCU-------------CGC-GGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 127146 | 0.73 | 0.119584 |
Target: 5'- gCGGGGGCGauguccaaguggaGGGGGGGcccGAGCaggGCCCUAa -3' miRNA: 3'- gGCCCCCGC-------------CCCCCUC---CUCG---CGGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 109653 | 0.73 | 0.11119 |
Target: 5'- gCGGGGaGuUGGGGGGGGGGGCggcgcuugcuuugGCCCg- -3' miRNA: 3'- gGCCCC-C-GCCCCCCUCCUCG-------------CGGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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