miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 26515 0.69 0.231284
Target:  5'- gCCGGGcGCGGGGccGGGGGCGUUCg- -3'
miRNA:   3'- -GGCCCcCGCCCCccUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 28216 0.68 0.264416
Target:  5'- aUGGGGGCGaGGcccGGGAGGGGaGCaCCg- -3'
miRNA:   3'- gGCCCCCGC-CC---CCCUCCUCgCG-GGau -5'
6507 3' -68.6 NC_001847.1 + 33117 0.67 0.30389
Target:  5'- gCCGGGGGCcccguaccugcggcgGGuGGuGGAGugggucgaGGGCGCUCUGg -3'
miRNA:   3'- -GGCCCCCG---------------CC-CC-CCUC--------CUCGCGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 21568 0.66 0.334963
Target:  5'- gCCGGGGaGaGGGcGGGAGaGGGgGCCg-- -3'
miRNA:   3'- -GGCCCC-CgCCC-CCCUC-CUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 53834 0.7 0.194413
Target:  5'- gCGGGGGCGcugaagagccggcgcGGGGGucaGGGGGUGCUgUGg -3'
miRNA:   3'- gGCCCCCGC---------------CCCCC---UCCUCGCGGgAU- -5'
6507 3' -68.6 NC_001847.1 + 22547 0.69 0.221044
Target:  5'- -aGGGGGCGGGacagagaaGaGGAGGAgcgguaagcggGCGCCCc- -3'
miRNA:   3'- ggCCCCCGCCC--------C-CCUCCU-----------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 122215 0.68 0.270299
Target:  5'- gCCGGGGcCGGGuGcccucAGGGGCGCCCa- -3'
miRNA:   3'- -GGCCCCcGCCCcCc----UCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 51528 0.66 0.334963
Target:  5'- gCCGGcaGGCGGGGGc---GGCGCCCa- -3'
miRNA:   3'- -GGCCc-CCGCCCCCcuccUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 17800 0.69 0.221044
Target:  5'- aCGGGccccaGCGGGcGGGAGG-GCGCCa-- -3'
miRNA:   3'- gGCCCc----CGCCC-CCCUCCuCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 5285 0.66 0.342018
Target:  5'- cCCGGGGaCGGGGGuacGGcGAGCGCgacggcgaggguCCUGg -3'
miRNA:   3'- -GGCCCCcGCCCCCc--UC-CUCGCG------------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 32915 0.68 0.270299
Target:  5'- gCCGGGGccGCGGacGGGAGGAG-GCCg-- -3'
miRNA:   3'- -GGCCCC--CGCCc-CCCUCCUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 3983 0.69 0.229723
Target:  5'- gCCGGGGGcCGGgcgcgcggccccgcGGGGcgccGGGcccGGCGCCCg- -3'
miRNA:   3'- -GGCCCCC-GCC--------------CCCC----UCC---UCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 52707 0.68 0.270299
Target:  5'- gCGGGGuugcCGGgaagaccaaGGGGAGGAGCGCgCa- -3'
miRNA:   3'- gGCCCCc---GCC---------CCCCUCCUCGCGgGau -5'
6507 3' -68.6 NC_001847.1 + 22775 0.67 0.282379
Target:  5'- aUGGGGGCgagggaucGGGGGGAuggggauggGGGGCGaggggaaCCUGg -3'
miRNA:   3'- gGCCCCCG--------CCCCCCU---------CCUCGCg------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 90754 0.67 0.31444
Target:  5'- gCCGGGcccCGGGaGcGGGAGCGCCCUu -3'
miRNA:   3'- -GGCCCcc-GCCCcCcUCCUCGCGGGAu -5'
6507 3' -68.6 NC_001847.1 + 29601 0.66 0.334263
Target:  5'- gCCGGGGGCcgguggaaguGGaGGuGGAGGAcaugagggccgggGCGCCg-- -3'
miRNA:   3'- -GGCCCCCG----------CC-CC-CCUCCU-------------CGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 57660 0.7 0.175498
Target:  5'- cUCGGGccGGCGGGccGGGccGGGCGCCCg- -3'
miRNA:   3'- -GGCCC--CCGCCC--CCCucCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 32222 0.7 0.179648
Target:  5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3'
miRNA:   3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5'
6507 3' -68.6 NC_001847.1 + 26091 0.69 0.211193
Target:  5'- gCUGGGGGCGGaGGGAGcaguGGCGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCcCCCUCc---UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 29918 0.69 0.21607
Target:  5'- gCgGGGGGCcccucGGGGGAGGAGa-CUCUGg -3'
miRNA:   3'- -GgCCCCCGc----CCCCCUCCUCgcGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.