miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 69295 0.66 0.689921
Target:  5'- cGCGGgcguGCGGGCGGaccGGcugccuuuuGGGCGCGGg -3'
miRNA:   3'- -CGCCacu-CGUUCGUC---CC---------UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 107780 0.66 0.699804
Target:  5'- cGCGcccGGGgGGGCAGcuGGGGCuGCGGCg -3'
miRNA:   3'- -CGCca-CUCgUUCGUCc-CUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 125736 0.66 0.699804
Target:  5'- uGgGGUGGGCuGGCuGGGcuGGGCuG-GGCu -3'
miRNA:   3'- -CgCCACUCGuUCGuCCC--UCCG-CgCCG- -5'
6510 3' -60.3 NC_001847.1 + 14791 0.66 0.699804
Target:  5'- cGCGGcGuacaaaaccGC-AGCGGcGGAGcuGCGCGGCg -3'
miRNA:   3'- -CGCCaCu--------CGuUCGUC-CCUC--CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 130003 0.66 0.689921
Target:  5'- cGCGGUGGG--GGUGGGGGGGgGgaaGGg -3'
miRNA:   3'- -CGCCACUCguUCGUCCCUCCgCg--CCg -5'
6510 3' -60.3 NC_001847.1 + 87949 0.66 0.669025
Target:  5'- cGCGGUGAGCGuguucaaAGUgauauGGGAagagguguucggGGCcCGGCu -3'
miRNA:   3'- -CGCCACUCGU-------UCGu----CCCU------------CCGcGCCG- -5'
6510 3' -60.3 NC_001847.1 + 71070 0.66 0.670024
Target:  5'- cCGGUGcuGGCGGcGCucGGccGGCGCGGCc -3'
miRNA:   3'- cGCCAC--UCGUU-CGucCCu-CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 42602 0.66 0.660027
Target:  5'- gGUGGUGAcagggacgGCGccgccGCGGaGGGGG-GCGGCa -3'
miRNA:   3'- -CGCCACU--------CGUu----CGUC-CCUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 18003 0.66 0.699804
Target:  5'- aGCGucgGGGCuguuGGGCGuGGGGGGCGuuGCg -3'
miRNA:   3'- -CGCca-CUCG----UUCGU-CCCUCCGCgcCG- -5'
6510 3' -60.3 NC_001847.1 + 70367 0.66 0.699804
Target:  5'- ----aGAGCGAGgGGGcgccGGGGCGCGaGCu -3'
miRNA:   3'- cgccaCUCGUUCgUCC----CUCCGCGC-CG- -5'
6510 3' -60.3 NC_001847.1 + 112940 0.66 0.689921
Target:  5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3'
miRNA:   3'- cGCCacuCGUuCGuCCCUCCGCGcCG- -5'
6510 3' -60.3 NC_001847.1 + 2193 0.66 0.706691
Target:  5'- gGCGGcGuGCGGGCGcaccucaaacaugcGGuaGAGGuCGCGGCc -3'
miRNA:   3'- -CGCCaCuCGUUCGU--------------CC--CUCC-GCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 53611 0.66 0.689921
Target:  5'- aCGGUG-GCGGGCGGc--GGgGUGGCa -3'
miRNA:   3'- cGCCACuCGUUCGUCccuCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 127987 0.66 0.656021
Target:  5'- cCGGgcGAGCGAGCgcgacacgcccgaaGGGGAGGgGgcaagacCGGCa -3'
miRNA:   3'- cGCCa-CUCGUUCG--------------UCCCUCCgC-------GCCG- -5'
6510 3' -60.3 NC_001847.1 + 120675 0.66 0.689921
Target:  5'- uCGGUGAGCccgGAGacccaGAGGCcGCGGCc -3'
miRNA:   3'- cGCCACUCG---UUCgucc-CUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 35177 0.66 0.699804
Target:  5'- cCGG-GGGCAcGCGGccuucgaggaGGAGcgcGCGCGGCu -3'
miRNA:   3'- cGCCaCUCGUuCGUC----------CCUC---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 72394 0.66 0.689921
Target:  5'- gGUGGUGGacGCGGGCcccgacgcGGGGAcGGCcaCGGCc -3'
miRNA:   3'- -CGCCACU--CGUUCG--------UCCCU-CCGc-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 84230 0.66 0.670024
Target:  5'- aCGGccgGGGCcgccGCgGGGGAGGaggGCGGCg -3'
miRNA:   3'- cGCCa--CUCGuu--CG-UCCCUCCg--CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 34014 0.66 0.699804
Target:  5'- gGCGGUGcugGGCAccgcGCuGGGccAGGCgaugggccccGCGGCg -3'
miRNA:   3'- -CGCCAC---UCGUu---CGuCCC--UCCG----------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 94147 0.66 0.660027
Target:  5'- gGUGcUGGGCGAcaucucGCGGcGGcugcuGGGCGCGGCc -3'
miRNA:   3'- -CGCcACUCGUU------CGUC-CC-----UCCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.