miRNA display CGI


Results 1 - 20 of 429 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 27521 0.75 0.233621
Target:  5'- cGCGGcG-GC-GGCGGGGAcgcccgagaacggcGGCGCGGCg -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCU--------------CCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 128791 0.77 0.175374
Target:  5'- gGCGGUcagaccaGGGCGGGCGGGcGGGcGCGCaGGCg -3'
miRNA:   3'- -CGCCA-------CUCGUUCGUCC-CUC-CGCG-CCG- -5'
6510 3' -60.3 NC_001847.1 + 104886 0.77 0.180206
Target:  5'- aGCGGUGgcGGCGAGCGccccgcGGGGcccGCGCGGCg -3'
miRNA:   3'- -CGCCAC--UCGUUCGU------CCCUc--CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 94216 0.77 0.1847
Target:  5'- cGCGGcgGAGCucgcGGCGGGGcgcccGCGCGGCg -3'
miRNA:   3'- -CGCCa-CUCGu---UCGUCCCuc---CGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 29065 0.76 0.193985
Target:  5'- gGCGGUGGGCugcguGGCGGuGGcGG-GCGGCg -3'
miRNA:   3'- -CGCCACUCGu----UCGUC-CCuCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 54385 0.76 0.208678
Target:  5'- uGCGGcGGGCGGccGCGGGcGAGGCG-GGCg -3'
miRNA:   3'- -CGCCaCUCGUU--CGUCC-CUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 87888 0.76 0.212242
Target:  5'- cGCGGcuuucUGGGCGgggcuuugcacaggGGCGGGGcguggggcuGGGCGCGGCc -3'
miRNA:   3'- -CGCC-----ACUCGU--------------UCGUCCC---------UCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 59381 0.76 0.213785
Target:  5'- gGCGGccGGCAaaaaauacggAGcCGGcGGAGGCGCGGCg -3'
miRNA:   3'- -CGCCacUCGU----------UC-GUC-CCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 48485 0.75 0.218473
Target:  5'- cGCGGgucGAGCGcGGCgcgcuccGGGGcGGCGCGGCc -3'
miRNA:   3'- -CGCCa--CUCGU-UCG-------UCCCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 109652 0.77 0.171508
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuuCgUCCCUCCgCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 21854 0.77 0.167301
Target:  5'- uCGGUGcAGCAGGUGGugcGGGGGCuGCGGCg -3'
miRNA:   3'- cGCCAC-UCGUUCGUC---CCUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 59550 0.79 0.136858
Target:  5'- gGCGGUGGGgGcGGCGGGGGcGGUGcCGGCg -3'
miRNA:   3'- -CGCCACUCgU-UCGUCCCU-CCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 108964 1.12 0.000562
Target:  5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 100535 0.82 0.083902
Target:  5'- cGCGGagUGGGUggGCGGGGAgccGGcCGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGuuCGUCCCU---CC-GCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 43237 0.82 0.086121
Target:  5'- gGCGGUGGGgGcGCGcGGGcGGCGCGGCg -3'
miRNA:   3'- -CGCCACUCgUuCGU-CCCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 102662 0.81 0.090726
Target:  5'- cCGG-GAGCGgccgcgagGGCGGGGGGGCGgGGCg -3'
miRNA:   3'- cGCCaCUCGU--------UCGUCCCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 66 0.8 0.117458
Target:  5'- gGCGGgcggGGGCGGGguGGGggauGGGCGCGGa -3'
miRNA:   3'- -CGCCa---CUCGUUCguCCC----UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 84458 0.8 0.117458
Target:  5'- cGCGGggggugggGAGCGGGgGGGGGGGCGgGGg -3'
miRNA:   3'- -CGCCa-------CUCGUUCgUCCCUCCGCgCCg -5'
6510 3' -60.3 NC_001847.1 + 130559 0.79 0.126815
Target:  5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5'
6510 3' -60.3 NC_001847.1 + 128532 0.79 0.134793
Target:  5'- cGCGGcUGGGCccuucacacaggcaaAAGUAGGGAGGCagggccGCGGCg -3'
miRNA:   3'- -CGCC-ACUCG---------------UUCGUCCCUCCG------CGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.