miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 3' -60.3 NC_001847.1 + 108870 1.13 0.000518
Target:  5'- gGCGGUGAGCAAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 6057 1.13 0.000518
Target:  5'- gGCGGUGAGCAAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 6151 1.12 0.000562
Target:  5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 108964 1.12 0.000562
Target:  5'- gGCGGUGAGCGAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 100535 0.82 0.083902
Target:  5'- cGCGGagUGGGUggGCGGGGAgccGGcCGCGGCg -3'
miRNA:   3'- -CGCC--ACUCGuuCGUCCCU---CC-GCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 43237 0.82 0.086121
Target:  5'- gGCGGUGGGgGcGCGcGGGcGGCGCGGCg -3'
miRNA:   3'- -CGCCACUCgUuCGU-CCCuCCGCGCCG- -5'
6510 3' -60.3 NC_001847.1 + 15333 0.81 0.088395
Target:  5'- aGCGG-GGGCGGGCGGGGGGuGCGUgauGGCu -3'
miRNA:   3'- -CGCCaCUCGUUCGUCCCUC-CGCG---CCG- -5'
6510 3' -60.3 NC_001847.1 + 102662 0.81 0.090726
Target:  5'- cCGG-GAGCGgccgcgagGGCGGGGGGGCGgGGCg -3'
miRNA:   3'- cGCCaCUCGU--------UCGUCCCUCCGCgCCG- -5'
6510 3' -60.3 NC_001847.1 + 134645 0.8 0.105981
Target:  5'- gGCGGgccgGcAGCAGGCGcGGAGGCGCGGg -3'
miRNA:   3'- -CGCCa---C-UCGUUCGUcCCUCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 96368 0.8 0.111581
Target:  5'- gGCGGUG-GCAauGGCGGGGccGGCGgCGGCa -3'
miRNA:   3'- -CGCCACuCGU--UCGUCCCu-CCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 66 0.8 0.117458
Target:  5'- gGCGGgcggGGGCGGGguGGGggauGGGCGCGGa -3'
miRNA:   3'- -CGCCa---CUCGUUCguCCC----UCCGCGCCg -5'
6510 3' -60.3 NC_001847.1 + 84458 0.8 0.117458
Target:  5'- cGCGGggggugggGAGCGGGgGGGGGGGCGgGGg -3'
miRNA:   3'- -CGCCa-------CUCGUUCgUCCCUCCGCgCCg -5'
6510 3' -60.3 NC_001847.1 + 130559 0.79 0.126815
Target:  5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5'
6510 3' -60.3 NC_001847.1 + 27746 0.79 0.126815
Target:  5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5'
6510 3' -60.3 NC_001847.1 + 128532 0.79 0.134793
Target:  5'- cGCGGcUGGGCccuucacacaggcaaAAGUAGGGAGGCagggccGCGGCg -3'
miRNA:   3'- -CGCC-ACUCG---------------UUCGUCCCUCCG------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 25719 0.79 0.134793
Target:  5'- cGCGGcUGGGCccuucacacaggcaaAAGUAGGGAGGCagggccGCGGCg -3'
miRNA:   3'- -CGCC-ACUCG---------------UUCGUCCCUCCG------CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 59550 0.79 0.136858
Target:  5'- gGCGGUGGGgGcGGCGGGGGcGGUGcCGGCg -3'
miRNA:   3'- -CGCCACUCgU-UCGUCCCU-CCGC-GCCG- -5'
6510 3' -60.3 NC_001847.1 + 51518 0.78 0.147257
Target:  5'- cCGGUGcggcgccGGCAGGCGGGGGcGGCGCccaGGCg -3'
miRNA:   3'- cGCCAC-------UCGUUCGUCCCU-CCGCG---CCG- -5'
6510 3' -60.3 NC_001847.1 + 21854 0.77 0.167301
Target:  5'- uCGGUGcAGCAGGUGGugcGGGGGCuGCGGCg -3'
miRNA:   3'- cGCCAC-UCGUUCGUC---CCUCCG-CGCCG- -5'
6510 3' -60.3 NC_001847.1 + 109652 0.77 0.171508
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuuCgUCCCUCCgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.