Results 1 - 20 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6510 | 3' | -60.3 | NC_001847.1 | + | 64691 | 0.66 | 0.719398 |
Target: 5'- cGCGcGUGucGCAGuGC-GucAGGCGCGGCa -3' miRNA: 3'- -CGC-CACu-CGUU-CGuCccUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 11822 | 0.66 | 0.699804 |
Target: 5'- aCGGcacAGCGcGCGGGGGGGgG-GGCg -3' miRNA: 3'- cGCCac-UCGUuCGUCCCUCCgCgCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 81244 | 0.66 | 0.699804 |
Target: 5'- gGCGGggccgucGCGAGgAcGGGGGGCccgcccgcccccGCGGCg -3' miRNA: 3'- -CGCCacu----CGUUCgU-CCCUCCG------------CGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 6057 | 1.13 | 0.000518 |
Target: 5'- gGCGGUGAGCAAGCAGGGAGGCGCGGCa -3' miRNA: 3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 115973 | 0.66 | 0.718425 |
Target: 5'- cGCcGUGcuGC--GCGGGGuaacaacGGGCGCGGCc -3' miRNA: 3'- -CGcCACu-CGuuCGUCCC-------UCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 41977 | 0.66 | 0.716476 |
Target: 5'- uGCGuucgGGGCGucGCGgccgccuuucccgcGGGGGGCGcCGGCa -3' miRNA: 3'- -CGCca--CUCGUu-CGU--------------CCCUCCGC-GCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 87996 | 0.66 | 0.709633 |
Target: 5'- uGCGGc---CGGGCccGaGGGGCGCGGCg -3' miRNA: 3'- -CGCCacucGUUCGucC-CUCCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 76748 | 0.66 | 0.709633 |
Target: 5'- aCGGUcGGGCGcucgGGCGGGGGGcaCGCaaaGGCg -3' miRNA: 3'- cGCCA-CUCGU----UCGUCCCUCc-GCG---CCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 56031 | 0.66 | 0.709633 |
Target: 5'- gGCGGcGGGCcuucuuccaCAGGcacGGCGCGGCg -3' miRNA: 3'- -CGCCaCUCGuuc------GUCCcu-CCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 56315 | 0.66 | 0.707672 |
Target: 5'- cGCGGcGGGCGcgcgaaggccguaaaGGCgaAGGGguccacaugcuccgcGGGCGCGGg -3' miRNA: 3'- -CGCCaCUCGU---------------UCG--UCCC---------------UCCGCGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 36 | 0.66 | 0.709633 |
Target: 5'- cCGGggGGGUguuuuuGGGgGGGGGcggaaauuucGGCGCGGCg -3' miRNA: 3'- cGCCa-CUCG------UUCgUCCCU----------CCGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 139 | 0.66 | 0.709633 |
Target: 5'- cGCGGgccucGGGCcccGGCcGGGGGGC-CGGg -3' miRNA: 3'- -CGCCa----CUCGu--UCGuCCCUCCGcGCCg -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 39405 | 0.66 | 0.719398 |
Target: 5'- cCGGccGGGCuccuccgaAAGCagcgAGGGGGGCGCgugGGCg -3' miRNA: 3'- cGCCa-CUCG--------UUCG----UCCCUCCGCG---CCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 2234 | 0.66 | 0.708653 |
Target: 5'- cGCGGcgcUGGGCGcgGGCGugugguaguccccGGGcGGCacGCGGCg -3' miRNA: 3'- -CGCC---ACUCGU--UCGU-------------CCCuCCG--CGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 32315 | 0.66 | 0.719398 |
Target: 5'- cCGG--GGUc-GCAGGGGGcccGCGCGGCg -3' miRNA: 3'- cGCCacUCGuuCGUCCCUC---CGCGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 46888 | 0.66 | 0.709633 |
Target: 5'- cGCGuGcGAGCGccgcuucagcgaGGCuucGGGGGGCGCgucgGGCc -3' miRNA: 3'- -CGC-CaCUCGU------------UCGu--CCCUCCGCG----CCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 46774 | 0.66 | 0.708653 |
Target: 5'- cGCGGUaaagaggGGGgGGGgGGGGAGGgcuaCGGCa -3' miRNA: 3'- -CGCCA-------CUCgUUCgUCCCUCCgc--GCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 86634 | 0.66 | 0.699804 |
Target: 5'- aGCGuGUGGGCGGGCcGcgccgccccGGAGcGCGCcGCg -3' miRNA: 3'- -CGC-CACUCGUUCGuC---------CCUC-CGCGcCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 21954 | 0.66 | 0.719398 |
Target: 5'- cGCGGc-GGCAccgGGGGGGGCuuucgGCGGCg -3' miRNA: 3'- -CGCCacUCGUucgUCCCUCCG-----CGCCG- -5' |
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6510 | 3' | -60.3 | NC_001847.1 | + | 117502 | 0.66 | 0.710613 |
Target: 5'- aGCGcGUGGGCAGGUuccgcuccacGCGCGGCg -3' miRNA: 3'- -CGC-CACUCGUUCGucccuc----CGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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