miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6510 5' -57.3 NC_001847.1 + 75954 0.68 0.71987
Target:  5'- -cGGCUCGg--GCUacgacgGCCCCCUCgaCCg -3'
miRNA:   3'- guCCGAGUaaaCGGa-----UGGGGGAGg-GG- -5'
6510 5' -57.3 NC_001847.1 + 32057 0.68 0.71987
Target:  5'- gCGGGCUCg---GCg-GCCCCCgggcucgggCCCCu -3'
miRNA:   3'- -GUCCGAGuaaaCGgaUGGGGGa--------GGGG- -5'
6510 5' -57.3 NC_001847.1 + 63606 0.68 0.71987
Target:  5'- -uGGC-CGcgUGCCUcugcuACCCCUUCgCCCg -3'
miRNA:   3'- guCCGaGUaaACGGA-----UGGGGGAG-GGG- -5'
6510 5' -57.3 NC_001847.1 + 122652 0.68 0.709879
Target:  5'- cCGGGUUCuug-GCC-GCCCCCgCCgCCa -3'
miRNA:   3'- -GUCCGAGuaaaCGGaUGGGGGaGG-GG- -5'
6510 5' -57.3 NC_001847.1 + 38720 0.68 0.709879
Target:  5'- gGGGC-CGc--GCCUGCCgCCggCCCCg -3'
miRNA:   3'- gUCCGaGUaaaCGGAUGGgGGa-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 23628 0.68 0.709879
Target:  5'- aAGGUUCugcagUGCgc-CCCCCUCCUCu -3'
miRNA:   3'- gUCCGAGuaa--ACGgauGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 126441 0.68 0.709879
Target:  5'- aAGGUUCugcagUGCgc-CCCCCUCCUCu -3'
miRNA:   3'- gUCCGAGuaa--ACGgauGGGGGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 44808 0.68 0.709879
Target:  5'- -cGGCUUuggcgGCUgcGCCCCCggCCCCg -3'
miRNA:   3'- guCCGAGuaaa-CGGa-UGGGGGa-GGGG- -5'
6510 5' -57.3 NC_001847.1 + 102981 0.68 0.699822
Target:  5'- gGGGUUCugc-GUCUugGCCCCCggggCCCCc -3'
miRNA:   3'- gUCCGAGuaaaCGGA--UGGGGGa---GGGG- -5'
6510 5' -57.3 NC_001847.1 + 27045 0.68 0.699822
Target:  5'- --cGCUC----GCCgUACCCCCgUCCCCg -3'
miRNA:   3'- gucCGAGuaaaCGG-AUGGGGG-AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 168 0.68 0.699822
Target:  5'- gGGGUUCugc-GUCUugGCCCCCggggCCCCc -3'
miRNA:   3'- gUCCGAGuaaaCGGA--UGGGGGa---GGGG- -5'
6510 5' -57.3 NC_001847.1 + 129858 0.68 0.699822
Target:  5'- --cGCUC----GCCgUACCCCCgUCCCCg -3'
miRNA:   3'- gucCGAGuaaaCGG-AUGGGGG-AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 9531 0.69 0.679546
Target:  5'- cCAGGUUCc----CCUcGCCCCCcaUCCCCa -3'
miRNA:   3'- -GUCCGAGuaaacGGA-UGGGGG--AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 99835 0.69 0.679546
Target:  5'- uUAGuGCUUugcgUUGCCcGCCCCCgCCCa -3'
miRNA:   3'- -GUC-CGAGua--AACGGaUGGGGGaGGGg -5'
6510 5' -57.3 NC_001847.1 + 112344 0.69 0.679546
Target:  5'- cCAGGUUCc----CCUcGCCCCCcaUCCCCa -3'
miRNA:   3'- -GUCCGAGuaaacGGA-UGGGGG--AGGGG- -5'
6510 5' -57.3 NC_001847.1 + 104766 0.69 0.678527
Target:  5'- cCGGcGCUCGUccucGCCgggcgGCCCgccagcgCCUCCCCg -3'
miRNA:   3'- -GUC-CGAGUAaa--CGGa----UGGG-------GGAGGGG- -5'
6510 5' -57.3 NC_001847.1 + 88350 0.69 0.669344
Target:  5'- --uGCUCGUcUGCCguaGCCCUCcCCCCc -3'
miRNA:   3'- gucCGAGUAaACGGa--UGGGGGaGGGG- -5'
6510 5' -57.3 NC_001847.1 + 124783 0.69 0.669344
Target:  5'- gGGGCUUucg-GCggcgGCCCCCUCgCCg -3'
miRNA:   3'- gUCCGAGuaaaCGga--UGGGGGAGgGG- -5'
6510 5' -57.3 NC_001847.1 + 21970 0.69 0.669344
Target:  5'- gGGGCUUucg-GCggcgGCCCCCUCgCCg -3'
miRNA:   3'- gUCCGAGuaaaCGga--UGGGGGAGgGG- -5'
6510 5' -57.3 NC_001847.1 + 108668 0.69 0.659112
Target:  5'- cCAGGCcCGcc--CCUACcaguuCCCCUCCCCa -3'
miRNA:   3'- -GUCCGaGUaaacGGAUG-----GGGGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.