miRNA display CGI


Results 1 - 20 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 5' -65 NC_001847.1 + 118840 0.66 0.443154
Target:  5'- cCCGCGCCgCGGguGacgguauacgucGaCCCGCCggcGUACc -3'
miRNA:   3'- -GGCGCGG-GCCguC------------C-GGGCGGaa-CGUG- -5'
6511 5' -65 NC_001847.1 + 19237 0.66 0.45184
Target:  5'- gCCaGCGCCUGcGCGaGCCgGCCaagcgGCGCg -3'
miRNA:   3'- -GG-CGCGGGC-CGUcCGGgCGGaa---CGUG- -5'
6511 5' -65 NC_001847.1 + 31029 0.66 0.45184
Target:  5'- gCGCGCgCCGGCAacGCCgGCCgacGuCGCg -3'
miRNA:   3'- gGCGCG-GGCCGUc-CGGgCGGaa-C-GUG- -5'
6511 5' -65 NC_001847.1 + 65260 0.66 0.45184
Target:  5'- cCCGgGCCCgcGGCcGGUCCGCagcgGCGg -3'
miRNA:   3'- -GGCgCGGG--CCGuCCGGGCGgaa-CGUg -5'
6511 5' -65 NC_001847.1 + 46946 0.66 0.450968
Target:  5'- -gGUGUCCGGCAGcagaaagccccgcGCCCggGCCaaGCGCa -3'
miRNA:   3'- ggCGCGGGCCGUC-------------CGGG--CGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 52279 0.66 0.443154
Target:  5'- cCCGCGCgCCGGCuuuguGuGCgCGaCCgcggGCGCg -3'
miRNA:   3'- -GGCGCG-GGCCGu----C-CGgGC-GGaa--CGUG- -5'
6511 5' -65 NC_001847.1 + 96561 0.66 0.45184
Target:  5'- gCGCGCgCGGUcugcuGGCCgugUGCCUggGCGCc -3'
miRNA:   3'- gGCGCGgGCCGu----CCGG---GCGGAa-CGUG- -5'
6511 5' -65 NC_001847.1 + 27084 0.66 0.45184
Target:  5'- aCCGCGCCCacGCuggAGGCgUCGCCgaggucGCGCc -3'
miRNA:   3'- -GGCGCGGGc-CG---UCCG-GGCGGaa----CGUG- -5'
6511 5' -65 NC_001847.1 + 8231 0.66 0.443154
Target:  5'- gCUGCGCCaCGcGCuGGCCUGCg--GCAg -3'
miRNA:   3'- -GGCGCGG-GC-CGuCCGGGCGgaaCGUg -5'
6511 5' -65 NC_001847.1 + 104578 0.66 0.45184
Target:  5'- aCCGCGCCgCGGaaggcCAGGuCCCGCgUcgagagcagcaGCACg -3'
miRNA:   3'- -GGCGCGG-GCC-----GUCC-GGGCGgAa----------CGUG- -5'
6511 5' -65 NC_001847.1 + 88899 0.66 0.443154
Target:  5'- uCC-CGCCgGGgGcGGCUC-CCUUGCGCg -3'
miRNA:   3'- -GGcGCGGgCCgU-CCGGGcGGAACGUG- -5'
6511 5' -65 NC_001847.1 + 5676 0.66 0.446617
Target:  5'- gUCGCGCgCGGCGGcGgCCGCCagcucaaguagccgcUUGgACa -3'
miRNA:   3'- -GGCGCGgGCCGUC-CgGGCGG---------------AACgUG- -5'
6511 5' -65 NC_001847.1 + 133412 0.66 0.45184
Target:  5'- uCUGCGCgCGGCuGGCC-GCg--GCGCg -3'
miRNA:   3'- -GGCGCGgGCCGuCCGGgCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 25818 0.66 0.45184
Target:  5'- gCCGCgucgGCCgGGCAGGCU-GUCU-GCAUg -3'
miRNA:   3'- -GGCG----CGGgCCGUCCGGgCGGAaCGUG- -5'
6511 5' -65 NC_001847.1 + 29899 0.66 0.45184
Target:  5'- cCUGcCGCCCGaaGUGcGCCCGCCUgugcccGCGCg -3'
miRNA:   3'- -GGC-GCGGGC--CGUcCGGGCGGAa-----CGUG- -5'
6511 5' -65 NC_001847.1 + 131568 0.66 0.443154
Target:  5'- gCGgGCCCGGaccugcagcuGGCgCGCCUgcUGCAg -3'
miRNA:   3'- gGCgCGGGCCgu--------CCGgGCGGA--ACGUg -5'
6511 5' -65 NC_001847.1 + 133164 0.66 0.443154
Target:  5'- cCCGCuGCCCGGgGaggcgcuggcGGCgCCGCCcgGCGa -3'
miRNA:   3'- -GGCG-CGGGCCgU----------CCG-GGCGGaaCGUg -5'
6511 5' -65 NC_001847.1 + 36978 0.66 0.45184
Target:  5'- -gGCGCCggCGaGCGGGCCCgcGCCgaGCGg -3'
miRNA:   3'- ggCGCGG--GC-CGUCCGGG--CGGaaCGUg -5'
6511 5' -65 NC_001847.1 + 77220 0.66 0.443154
Target:  5'- gCCGCgGgCCGcCGGGCCCGgaCUUGgCGCg -3'
miRNA:   3'- -GGCG-CgGGCcGUCCGGGCg-GAAC-GUG- -5'
6511 5' -65 NC_001847.1 + 112496 0.66 0.440566
Target:  5'- gCC-CGCCCggGGCAaGCCCGcCCUccccggacgcgcccUGCGCg -3'
miRNA:   3'- -GGcGCGGG--CCGUcCGGGC-GGA--------------ACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.