miRNA display CGI


Results 1 - 20 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 5' -65 NC_001847.1 + 103172 0.76 0.109752
Target:  5'- uUCGCGCCCcg-GGGCCCGCCccGCGCg -3'
miRNA:   3'- -GGCGCGGGccgUCCGGGCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 104158 0.77 0.085328
Target:  5'- gCCGCGCCCuGCGcGGCCaUGuCCUUGCGCc -3'
miRNA:   3'- -GGCGCGGGcCGU-CCGG-GC-GGAACGUG- -5'
6511 5' -65 NC_001847.1 + 129312 0.77 0.087517
Target:  5'- -gGUGCaaGGCGGGCCUGCCggGCGCg -3'
miRNA:   3'- ggCGCGggCCGUCCGGGCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 56859 0.77 0.094406
Target:  5'- uCUGCGCCCGGC-GGCCCGg---GCGCg -3'
miRNA:   3'- -GGCGCGGGCCGuCCGGGCggaaCGUG- -5'
6511 5' -65 NC_001847.1 + 97991 0.77 0.096815
Target:  5'- gCCGCuuCCCGGCcgccccaaAGGCCCGCUgggcgUGCGCg -3'
miRNA:   3'- -GGCGc-GGGCCG--------UCCGGGCGGa----ACGUG- -5'
6511 5' -65 NC_001847.1 + 54905 0.76 0.099281
Target:  5'- gCCGuCGaCCCGGCAacguGGCCCGCgUUGaCGCa -3'
miRNA:   3'- -GGC-GC-GGGCCGU----CCGGGCGgAAC-GUG- -5'
6511 5' -65 NC_001847.1 + 109673 0.76 0.101807
Target:  5'- gCgGCGCuuG-CuuuGGCCCGCCUUGCGCu -3'
miRNA:   3'- -GgCGCGggCcGu--CCGGGCGGAACGUG- -5'
6511 5' -65 NC_001847.1 + 77481 0.76 0.104393
Target:  5'- -gGCGCCCGGCccGGCCCGCCg-GCcCg -3'
miRNA:   3'- ggCGCGGGCCGu-CCGGGCGGaaCGuG- -5'
6511 5' -65 NC_001847.1 + 133230 0.76 0.104393
Target:  5'- gCCGCGCCgCGGCGGGCUcuCGCac-GCGCu -3'
miRNA:   3'- -GGCGCGG-GCCGUCCGG--GCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 105911 0.77 0.085328
Target:  5'- gCCGCGgCCGGCAggccgcGGCCCGCCgcgGC-Cg -3'
miRNA:   3'- -GGCGCgGGCCGU------CCGGGCGGaa-CGuG- -5'
6511 5' -65 NC_001847.1 + 90820 0.78 0.083192
Target:  5'- aUCaCGCCCGGCGGGCaCCGCuCUgGCGCu -3'
miRNA:   3'- -GGcGCGGGCCGUCCG-GGCG-GAaCGUG- -5'
6511 5' -65 NC_001847.1 + 68458 0.78 0.075148
Target:  5'- uCCGCGCCCgcGGCcgGGGcCCCGCCgcgcggGCGCa -3'
miRNA:   3'- -GGCGCGGG--CCG--UCC-GGGCGGaa----CGUG- -5'
6511 5' -65 NC_001847.1 + 97680 0.82 0.040512
Target:  5'- gCCGgGCCCGGCcaacgcAGGCCCGCUgcUGCGCu -3'
miRNA:   3'- -GGCgCGGGCCG------UCCGGGCGGa-ACGUG- -5'
6511 5' -65 NC_001847.1 + 32011 0.8 0.053849
Target:  5'- uUCGCGCgCCGGC-GGCCCGCgCUcGCGCg -3'
miRNA:   3'- -GGCGCG-GGCCGuCCGGGCG-GAaCGUG- -5'
6511 5' -65 NC_001847.1 + 124905 0.8 0.056696
Target:  5'- gCGgGCCCGGCAGGCgCGCCggGgGCg -3'
miRNA:   3'- gGCgCGGGCCGUCCGgGCGGaaCgUG- -5'
6511 5' -65 NC_001847.1 + 92642 0.79 0.062833
Target:  5'- gCGCGCCCGGCGGuuucGCCCGCa--GCGCu -3'
miRNA:   3'- gGCGCGGGCCGUC----CGGGCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 83921 0.79 0.067852
Target:  5'- gCGCGCCCGcgaGCAgGGCCCGCUcgaagUGCGCg -3'
miRNA:   3'- gGCGCGGGC---CGU-CCGGGCGGa----ACGUG- -5'
6511 5' -65 NC_001847.1 + 16660 0.79 0.067852
Target:  5'- cCCGCGCCUacaGGCGcGCCCggGCCUUGCGCc -3'
miRNA:   3'- -GGCGCGGG---CCGUcCGGG--CGGAACGUG- -5'
6511 5' -65 NC_001847.1 + 113365 0.78 0.073069
Target:  5'- cCCGCGCCCGGCcggcgccGGGCCCGgCgccgGCGg -3'
miRNA:   3'- -GGCGCGGGCCG-------UCCGGGCgGaa--CGUg -5'
6511 5' -65 NC_001847.1 + 66174 0.78 0.075148
Target:  5'- gCCGUGCCCGcGCGGGCCgcgcuggaCGCCUggcuggagGCGCa -3'
miRNA:   3'- -GGCGCGGGC-CGUCCGG--------GCGGAa-------CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.