Results 1 - 20 of 814 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6511 | 5' | -65 | NC_001847.1 | + | 3515 | 0.66 | 0.495686 |
Target: 5'- aCGCuCCCGGUGaugaacgagcuguGGCCCcggcaGCCcUGCACg -3' miRNA: 3'- gGCGcGGGCCGU-------------CCGGG-----CGGaACGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 94167 | 0.66 | 0.478444 |
Target: 5'- gCGCgGCCCGGCGcaaccuGCUCGUCg-GCACg -3' miRNA: 3'- gGCG-CGGGCCGUc-----CGGGCGGaaCGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 58696 | 0.66 | 0.478444 |
Target: 5'- uCUGUGCCgCGGCGGaaaaGUCCGCgCgcGCGCu -3' miRNA: 3'- -GGCGCGG-GCCGUC----CGGGCG-GaaCGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 5829 | 1.09 | 0.00039 |
Target: 5'- cCCGCGCCCGGCAGGCCCGCCUUGCACc -3' miRNA: 3'- -GGCGCGGGCCGUCCGGGCGGAACGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 84861 | 0.66 | 0.487483 |
Target: 5'- aCuaGCCCGGCuaggcGGCCCacguacgcGCCcaGCGCg -3' miRNA: 3'- gGcgCGGGCCGu----CCGGG--------CGGaaCGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 80333 | 0.66 | 0.487483 |
Target: 5'- aCCGUGCCCGcGCucGCCaGCgcgGCGCg -3' miRNA: 3'- -GGCGCGGGC-CGucCGGgCGgaaCGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 43274 | 0.66 | 0.487483 |
Target: 5'- gCGCGUCCGGCGcuucGGCUU-CCUgaucGCGCa -3' miRNA: 3'- gGCGCGGGCCGU----CCGGGcGGAa---CGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 37852 | 0.66 | 0.487483 |
Target: 5'- aCGCGCCCcGCGGuCCCGgUguacgUGUACg -3' miRNA: 3'- gGCGCGGGcCGUCcGGGCgGa----ACGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 8127 | 0.66 | 0.487483 |
Target: 5'- aCCGCGgggCgGGCGGGCCgacgaGCCUcGCGg -3' miRNA: 3'- -GGCGCg--GgCCGUCCGGg----CGGAaCGUg -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 101470 | 0.66 | 0.478444 |
Target: 5'- cCUGCGCcucuagccCCGcGCGGGCCgCGgCCacGCGCg -3' miRNA: 3'- -GGCGCG--------GGC-CGUCCGG-GC-GGaaCGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 47793 | 0.66 | 0.487483 |
Target: 5'- -gGUGCUCGGcCAGGCCCucgGCCga-CACc -3' miRNA: 3'- ggCGCGGGCC-GUCCGGG---CGGaacGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 81253 | 0.66 | 0.487483 |
Target: 5'- gUCGCGaggaCGGgGGGCCCGCCcgccccCGCg -3' miRNA: 3'- -GGCGCgg--GCCgUCCGGGCGGaac---GUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 119608 | 0.66 | 0.487483 |
Target: 5'- gCGCGCaCCGGCGccagcagcccgcGGCucCCGCCgaGcCGCa -3' miRNA: 3'- gGCGCG-GGCCGU------------CCG--GGCGGaaC-GUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 26602 | 0.66 | 0.487483 |
Target: 5'- aCCGC-CCCgcgGGCAGGUaaGCCcucccagGCGCa -3' miRNA: 3'- -GGCGcGGG---CCGUCCGggCGGaa-----CGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 115536 | 0.66 | 0.487483 |
Target: 5'- cCCGgGCCCGaGCucGGGCCCGgaUCgggGCGg -3' miRNA: 3'- -GGCgCGGGC-CG--UCCGGGC--GGaa-CGUg -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 29986 | 0.66 | 0.487483 |
Target: 5'- gCCGgGCCggcgCGGCGGGagCCGCCgcUGCcCg -3' miRNA: 3'- -GGCgCGG----GCCGUCCg-GGCGGa-ACGuG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 129254 | 0.66 | 0.478444 |
Target: 5'- uCUGCGa-CGGCGcGG-CCGCCcUGCGCg -3' miRNA: 3'- -GGCGCggGCCGU-CCgGGCGGaACGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 69424 | 0.66 | 0.478444 |
Target: 5'- gCCGC-CCCGGCGGGCUcugggaugaacgCGuCCggGCGu -3' miRNA: 3'- -GGCGcGGGCCGUCCGG------------GC-GGaaCGUg -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 103351 | 0.66 | 0.487483 |
Target: 5'- aCCGCcacgGCCguaaGGCAGGCCguguugGCCggcGCGCg -3' miRNA: 3'- -GGCG----CGGg---CCGUCCGGg-----CGGaa-CGUG- -5' |
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6511 | 5' | -65 | NC_001847.1 | + | 47690 | 0.66 | 0.487483 |
Target: 5'- gCGCGCgCC-GCGGGgCCGUUgaGCGCg -3' miRNA: 3'- gGCGCG-GGcCGUCCgGGCGGaaCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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