miRNA display CGI


Results 1 - 20 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 5' -65 NC_001847.1 + 108642 1.09 0.00039
Target:  5'- cCCGCGCCCGGCAGGCCCGCCUUGCACc -3'
miRNA:   3'- -GGCGCGGGCCGUCCGGGCGGAACGUG- -5'
6511 5' -65 NC_001847.1 + 5829 1.09 0.00039
Target:  5'- cCCGCGCCCGGCAGGCCCGCCUUGCACc -3'
miRNA:   3'- -GGCGCGGGCCGUCCGGGCGGAACGUG- -5'
6511 5' -65 NC_001847.1 + 38114 0.85 0.024685
Target:  5'- gCCGCuGCCCGGCGGGUgCGCCggGCACc -3'
miRNA:   3'- -GGCG-CGGGCCGUCCGgGCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 97680 0.82 0.040512
Target:  5'- gCCGgGCCCGGCcaacgcAGGCCCGCUgcUGCGCu -3'
miRNA:   3'- -GGCgCGGGCCG------UCCGGGCGGa-ACGUG- -5'
6511 5' -65 NC_001847.1 + 32011 0.8 0.053849
Target:  5'- uUCGCGCgCCGGC-GGCCCGCgCUcGCGCg -3'
miRNA:   3'- -GGCGCG-GGCCGuCCGGGCG-GAaCGUG- -5'
6511 5' -65 NC_001847.1 + 13933 0.8 0.056696
Target:  5'- gCCGCGCCgCGGCAGGggggCCGCCccGCGCa -3'
miRNA:   3'- -GGCGCGG-GCCGUCCg---GGCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 124905 0.8 0.056696
Target:  5'- gCGgGCCCGGCAGGCgCGCCggGgGCg -3'
miRNA:   3'- gGCgCGGGCCGUCCGgGCGGaaCgUG- -5'
6511 5' -65 NC_001847.1 + 22092 0.8 0.056696
Target:  5'- gCGgGCCCGGCAGGCgCGCCggGgGCg -3'
miRNA:   3'- gGCgCGGGCCGUCCGgGCGGaaCgUG- -5'
6511 5' -65 NC_001847.1 + 101619 0.79 0.061241
Target:  5'- cCCGCGCCCGGCgccuccgcggcGGcGCCCGCCgccgcccGCGCc -3'
miRNA:   3'- -GGCGCGGGCCG-----------UC-CGGGCGGaa-----CGUG- -5'
6511 5' -65 NC_001847.1 + 92642 0.79 0.062833
Target:  5'- gCGCGCCCGGCGGuuucGCCCGCa--GCGCu -3'
miRNA:   3'- gGCGCGGGCCGUC----CGGGCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 83921 0.79 0.067852
Target:  5'- gCGCGCCCGcgaGCAgGGCCCGCUcgaagUGCGCg -3'
miRNA:   3'- gGCGCGGGC---CGU-CCGGGCGGa----ACGUG- -5'
6511 5' -65 NC_001847.1 + 16660 0.79 0.067852
Target:  5'- cCCGCGCCUacaGGCGcGCCCggGCCUUGCGCc -3'
miRNA:   3'- -GGCGCGGG---CCGUcCGGG--CGGAACGUG- -5'
6511 5' -65 NC_001847.1 + 10552 0.78 0.073069
Target:  5'- cCCGCGCCCGGCcggcgccGGGCCCGgCgccgGCGg -3'
miRNA:   3'- -GGCGCGGGCCG-------UCCGGGCgGaa--CGUg -5'
6511 5' -65 NC_001847.1 + 113365 0.78 0.073069
Target:  5'- cCCGCGCCCGGCcggcgccGGGCCCGgCgccgGCGg -3'
miRNA:   3'- -GGCGCGGGCCG-------UCCGGGCgGaa--CGUg -5'
6511 5' -65 NC_001847.1 + 68458 0.78 0.075148
Target:  5'- uCCGCGCCCgcGGCcgGGGcCCCGCCgcgcggGCGCa -3'
miRNA:   3'- -GGCGCGGG--CCG--UCC-GGGCGGaa----CGUG- -5'
6511 5' -65 NC_001847.1 + 66174 0.78 0.075148
Target:  5'- gCCGUGCCCGcGCGGGCCgcgcuggaCGCCUggcuggagGCGCa -3'
miRNA:   3'- -GGCGCGGGC-CGUCCGG--------GCGGAa-------CGUG- -5'
6511 5' -65 NC_001847.1 + 56082 0.78 0.079072
Target:  5'- aCGCGCCCGGCuccGGCgCCGCgUUaaGCGCg -3'
miRNA:   3'- gGCGCGGGCCGu--CCG-GGCGgAA--CGUG- -5'
6511 5' -65 NC_001847.1 + 90820 0.78 0.083192
Target:  5'- aUCaCGCCCGGCGGGCaCCGCuCUgGCGCu -3'
miRNA:   3'- -GGcGCGGGCCGUCCG-GGCG-GAaCGUG- -5'
6511 5' -65 NC_001847.1 + 3098 0.77 0.085328
Target:  5'- gCCGCGgCCGGCAggccgcGGCCCGCCgcgGC-Cg -3'
miRNA:   3'- -GGCGCgGGCCGU------CCGGGCGGaa-CGuG- -5'
6511 5' -65 NC_001847.1 + 105911 0.77 0.085328
Target:  5'- gCCGCGgCCGGCAggccgcGGCCCGCCgcgGC-Cg -3'
miRNA:   3'- -GGCGCgGGCCGU------CCGGGCGGaa-CGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.